Cluster: Rep_2375_CGC25
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2375
- CGC Family ID: CGCFAM_01465
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2375_c_197 | Rep_2375_c_197_12 | 11105 | 11890 | - | 3.A.1.17.13 |
| TC | Rep_2375_c_197 | Rep_2375_c_197_13 | 11887 | 12633 | - | 3.A.1.17.8 |
| peptidase | Rep_2375_c_197 | Rep_2375_c_197_14 | 13008 | 13667 | + | S14.UPW |
| pfam | Rep_2375_c_197 | Rep_2375_c_197_15 | 13704 | 14651 | + | Radical_SAM | Fer4_12 |
| TC | Rep_2375_c_197 | Rep_2375_c_197_16 | 14747 | 16207 | + | 2.A.2.3.6 |
| CAZyme | Rep_2375_c_197 | Rep_2375_c_197_17 | 16197 | 18083 | + | GH13_11 |
Gene ID: Rep_2375_c_197_12
Type: TC
Location: 11105 - 11890 (-)
Type: TC
Location: 11105 - 11890 (-)
Gene ID: Rep_2375_c_197_13
Type: TC
Location: 11887 - 12633 (-)
Type: TC
Location: 11887 - 12633 (-)
Gene ID: Rep_2375_c_197_14
Type: peptidase
Location: 13008 - 13667 (+)
Type: peptidase
Location: 13008 - 13667 (+)
Gene ID: Rep_2375_c_197_15
Type: pfam
Location: 13704 - 14651 (+)
Type: pfam
Location: 13704 - 14651 (+)
Gene ID: Rep_2375_c_197_16
Type: TC
Location: 14747 - 16207 (+)
Type: TC
Location: 14747 - 16207 (+)
Gene ID: Rep_2375_c_197_17
Type: CAZyme
Location: 16197 - 18083 (+)
Type: CAZyme
Location: 16197 - 18083 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnospira
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.