Cluster: Rep_2375_CGC2
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2375
- CGC Family ID: CGCFAM_02897
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_2375_c_45 | Rep_2375_c_45_1 | 1 | 552 | + | GT28 |
| TF | Rep_2375_c_45 | Rep_2375_c_45_2 | 697 | 1086 | + | FUR |
| pfam | Rep_2375_c_45 | Rep_2375_c_45_3 | 1225 | 1764 | + | Rubrerythrin | RUBY_RBDX |
| TC | Rep_2375_c_45 | Rep_2375_c_45_4 | 2142 | 2849 | + | 1.C.113.1.2 |
Gene ID: Rep_2375_c_45_1
Type: CAZyme
Location: 1 - 552 (+)
Type: CAZyme
Location: 1 - 552 (+)
Gene ID: Rep_2375_c_45_2
Type: TF
Location: 697 - 1086 (+)
Type: TF
Location: 697 - 1086 (+)
Gene ID: Rep_2375_c_45_3
Type: pfam
Location: 1225 - 1764 (+)
Type: pfam
Location: 1225 - 1764 (+)
Gene ID: Rep_2375_c_45_4
Type: TC
Location: 2142 - 2849 (+)
Type: TC
Location: 2142 - 2849 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnospira
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.