Cluster: Rep_2375_CGC17
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2375
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_2375_c_145 | Rep_2375_c_145_1 | 3 | 908 | - | GH94 |
| TF | Rep_2375_c_145 | Rep_2375_c_145_2 | 1323 | 2333 | + | LacI |
| NULL(UNKNOWN) | Rep_2375_c_145 | Rep_2375_c_145_3 | 2388 | 3749 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_2375_c_145 | Rep_2375_c_145_4 | 3857 | 4804 | + | 3.A.1.1.4 |
| TC | Rep_2375_c_145 | Rep_2375_c_145_5 | 4801 | 5721 | + | 3.A.1.1.36 |
Gene ID: Rep_2375_c_145_1
Type: CAZyme
Location: 3 - 908 (-)
Type: CAZyme
Location: 3 - 908 (-)
Gene ID: Rep_2375_c_145_2
Type: TF
Location: 1323 - 2333 (+)
Type: TF
Location: 1323 - 2333 (+)
Gene ID: Rep_2375_c_145_3
Type:
Location: 2388 - 3749 (+)
Type:
Location: 2388 - 3749 (+)
Gene ID: Rep_2375_c_145_4
Type: TC
Location: 3857 - 4804 (+)
Type: TC
Location: 3857 - 4804 (+)
Gene ID: Rep_2375_c_145_5
Type: TC
Location: 4801 - 5721 (+)
Type: TC
Location: 4801 - 5721 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnospira
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.