Cluster: Rep_2375_CGC12
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2375
- CGC Family ID: CGCFAM_02228
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2375_c_102 | Rep_2375_c_102_3 | 1330 | 2853 | + | 2.A.21.2.5 |
| CAZyme | Rep_2375_c_102 | Rep_2375_c_102_4 | 2953 | 3825 | - | CE4 |
| peptidase | Rep_2375_c_102 | Rep_2375_c_102_5 | 3925 | 5247 | - | S11.UPW |
| TC | Rep_2375_c_102 | Rep_2375_c_102_6 | 5399 | 6100 | + | 3.A.1.122.7 |
| pfam | Rep_2375_c_102 | Rep_2375_c_102_7 | 6112 | 8850 | + | FtsX | FtsX | MacB_PCD | MacB_PCD |
| TC | Rep_2375_c_102 | Rep_2375_c_102_8 | 8919 | 9839 | + | 9.B.70.1.1 |
Gene ID: Rep_2375_c_102_3
Type: TC
Location: 1330 - 2853 (+)
Type: TC
Location: 1330 - 2853 (+)
Gene ID: Rep_2375_c_102_4
Type: CAZyme
Location: 2953 - 3825 (-)
Type: CAZyme
Location: 2953 - 3825 (-)
Gene ID: Rep_2375_c_102_5
Type: peptidase
Location: 3925 - 5247 (-)
Type: peptidase
Location: 3925 - 5247 (-)
Gene ID: Rep_2375_c_102_6
Type: TC
Location: 5399 - 6100 (+)
Type: TC
Location: 5399 - 6100 (+)
Gene ID: Rep_2375_c_102_7
Type: pfam
Location: 6112 - 8850 (+)
Type: pfam
Location: 6112 - 8850 (+)
Gene ID: Rep_2375_c_102_8
Type: TC
Location: 8919 - 9839 (+)
Type: TC
Location: 8919 - 9839 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnospira
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.