Cluster: Rep_2375_CGC10
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_2375
- CGC Family ID: CGCFAM_00905
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2375_c_92 | Rep_2375_c_92_1 | 106 | 567 | + | 9.A.11.1.1 |
| NULL(UNKNOWN) | Rep_2375_c_92 | Rep_2375_c_92_2 | 615 | 1058 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_2375_c_92 | Rep_2375_c_92_3 | 1073 | 1807 | + | Endonuclea_NS_2 |
| TC | Rep_2375_c_92 | Rep_2375_c_92_4 | 1921 | 2946 | + | 9.A.11.1.1 |
| pfam | Rep_2375_c_92 | Rep_2375_c_92_5 | 2931 | 3293 | + | SpoVAC_SpoVAEB |
| CAZyme | Rep_2375_c_92 | Rep_2375_c_92_6 | 3400 | 6039 | - | GT51 |
| pfam | Rep_2375_c_92 | Rep_2375_c_92_7 | 6121 | 6774 | + | UPF0029 | DUF1949 |
| NULL(UNKNOWN) | Rep_2375_c_92 | Rep_2375_c_92_8 | 7150 | 8730 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_2375_c_92 | Rep_2375_c_92_9 | 8871 | 10343 | + | 3.A.1.1.10 |
| TC | Rep_2375_c_92 | Rep_2375_c_92_10 | 10358 | 11239 | + | 3.A.1.1.29 |
| CAZyme | Rep_2375_c_92 | Rep_2375_c_92_11 | 11509 | 13464 | + | CBM91 | GH43_12 |
| pfam | Rep_2375_c_92 | Rep_2375_c_92_12 | 13480 | 14436 | + | Glyco_hydro_88 |
| CAZyme | Rep_2375_c_92 | Rep_2375_c_92_13 | 14427 | 15980 | + | GH28 |
| TC | Rep_2375_c_92 | Rep_2375_c_92_14 | 15983 | 17716 | + | 3.A.1.106.2 |
Gene ID: Rep_2375_c_92_1
Type: TC
Location: 106 - 567 (+)
Type: TC
Location: 106 - 567 (+)
Gene ID: Rep_2375_c_92_2
Type:
Location: 615 - 1058 (+)
Type:
Location: 615 - 1058 (+)
Gene ID: Rep_2375_c_92_3
Type: pfam
Location: 1073 - 1807 (+)
Type: pfam
Location: 1073 - 1807 (+)
Gene ID: Rep_2375_c_92_4
Type: TC
Location: 1921 - 2946 (+)
Type: TC
Location: 1921 - 2946 (+)
Gene ID: Rep_2375_c_92_5
Type: pfam
Location: 2931 - 3293 (+)
Type: pfam
Location: 2931 - 3293 (+)
Gene ID: Rep_2375_c_92_6
Type: CAZyme
Location: 3400 - 6039 (-)
Type: CAZyme
Location: 3400 - 6039 (-)
Gene ID: Rep_2375_c_92_7
Type: pfam
Location: 6121 - 6774 (+)
Type: pfam
Location: 6121 - 6774 (+)
Gene ID: Rep_2375_c_92_8
Type:
Location: 7150 - 8730 (+)
Type:
Location: 7150 - 8730 (+)
Gene ID: Rep_2375_c_92_9
Type: TC
Location: 8871 - 10343 (+)
Type: TC
Location: 8871 - 10343 (+)
Gene ID: Rep_2375_c_92_10
Type: TC
Location: 10358 - 11239 (+)
Type: TC
Location: 10358 - 11239 (+)
Gene ID: Rep_2375_c_92_11
Type: CAZyme
Location: 11509 - 13464 (+)
Type: CAZyme
Location: 11509 - 13464 (+)
Gene ID: Rep_2375_c_92_12
Type: pfam
Location: 13480 - 14436 (+)
Type: pfam
Location: 13480 - 14436 (+)
Gene ID: Rep_2375_c_92_13
Type: CAZyme
Location: 14427 - 15980 (+)
Type: CAZyme
Location: 14427 - 15980 (+)
Gene ID: Rep_2375_c_92_14
Type: TC
Location: 15983 - 17716 (+)
Type: TC
Location: 15983 - 17716 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnospira
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.