Cluster: Rep_2367_CGC35
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_2367
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2367_c_5 | Rep_2367_c_5_15 | 16599 | 17501 | - | 3.A.1.1.36 |
| TC | Rep_2367_c_5 | Rep_2367_c_5_16 | 17503 | 18453 | - | 3.A.1.1.4 |
| NULL(UNKNOWN) | Rep_2367_c_5 | Rep_2367_c_5_17 | 18542 | 19897 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | Rep_2367_c_5 | Rep_2367_c_5_18 | 19930 | 20928 | - | LacI |
| CAZyme | Rep_2367_c_5 | Rep_2367_c_5_19 | 21203 | 23656 | + | GH94 |
| CAZyme | Rep_2367_c_5 | Rep_2367_c_5_20 | 23680 | 25065 | + | GH1 |
Gene ID: Rep_2367_c_5_15
Type: TC
Location: 16599 - 17501 (-)
Type: TC
Location: 16599 - 17501 (-)
Gene ID: Rep_2367_c_5_16
Type: TC
Location: 17503 - 18453 (-)
Type: TC
Location: 17503 - 18453 (-)
Gene ID: Rep_2367_c_5_17
Type:
Location: 18542 - 19897 (-)
Type:
Location: 18542 - 19897 (-)
Gene ID: Rep_2367_c_5_18
Type: TF
Location: 19930 - 20928 (-)
Type: TF
Location: 19930 - 20928 (-)
Gene ID: Rep_2367_c_5_19
Type: CAZyme
Location: 21203 - 23656 (+)
Type: CAZyme
Location: 21203 - 23656 (+)
Gene ID: Rep_2367_c_5_20
Type: CAZyme
Location: 23680 - 25065 (+)
Type: CAZyme
Location: 23680 - 25065 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnospira
Species
Lachnospira sp003537285
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.