Cluster: Rep_2367_CGC30
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2367
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_2367_c_3 | Rep_2367_c_3_217 | 199390 | 200529 | - | GH105 |
| TC | Rep_2367_c_3 | Rep_2367_c_3_218 | 200558 | 201865 | - | 2.A.56.1.5 |
| TC | Rep_2367_c_3 | Rep_2367_c_3_219 | 201902 | 202408 | - | 2.A.56.1.5 |
| TC | Rep_2367_c_3 | Rep_2367_c_3_220 | 202408 | 203430 | - | 2.A.56.1.5 |
Gene ID: Rep_2367_c_3_217
Type: CAZyme
Location: 199390 - 200529 (-)
Type: CAZyme
Location: 199390 - 200529 (-)
Gene ID: Rep_2367_c_3_218
Type: TC
Location: 200558 - 201865 (-)
Type: TC
Location: 200558 - 201865 (-)
Gene ID: Rep_2367_c_3_219
Type: TC
Location: 201902 - 202408 (-)
Type: TC
Location: 201902 - 202408 (-)
Gene ID: Rep_2367_c_3_220
Type: TC
Location: 202408 - 203430 (-)
Type: TC
Location: 202408 - 203430 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnospira
Species
Lachnospira sp003537285
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_2367_c_3_217 | vegan > omnivore | 1.36090 | 0.03990 |
| Rep_2367_c_3_220 | vegan > omnivore | 1.58255 | 0.01373 |