Cluster: Rep_2367_CGC25
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2367
- CGC Family ID: CGCFAM_09594
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2367_c_2 | Rep_2367_c_2_11 | 11190 | 11585 | + | 1.E.14.1.3 |
| TC | Rep_2367_c_2 | Rep_2367_c_2_12 | 11578 | 12270 | + | 2.A.122.1.6 |
| TC | Rep_2367_c_2 | Rep_2367_c_2_13 | 12289 | 12864 | + | 2.A.115.2.14 |
| TF | Rep_2367_c_2 | Rep_2367_c_2_14 | 12881 | 13561 | + | GntR |
| pfam | Rep_2367_c_2 | Rep_2367_c_2_15 | 13585 | 14235 | + | Hydrolase | HAD | Hydrolase_like | HAD_2 |
| CAZyme | Rep_2367_c_2 | Rep_2367_c_2_16 | 14241 | 15194 | - | CE12 |
Gene ID: Rep_2367_c_2_11
Type: TC
Location: 11190 - 11585 (+)
Type: TC
Location: 11190 - 11585 (+)
Gene ID: Rep_2367_c_2_12
Type: TC
Location: 11578 - 12270 (+)
Type: TC
Location: 11578 - 12270 (+)
Gene ID: Rep_2367_c_2_13
Type: TC
Location: 12289 - 12864 (+)
Type: TC
Location: 12289 - 12864 (+)
Gene ID: Rep_2367_c_2_14
Type: TF
Location: 12881 - 13561 (+)
Type: TF
Location: 12881 - 13561 (+)
Gene ID: Rep_2367_c_2_15
Type: pfam
Location: 13585 - 14235 (+)
Type: pfam
Location: 13585 - 14235 (+)
Gene ID: Rep_2367_c_2_16
Type: CAZyme
Location: 14241 - 15194 (-)
Type: CAZyme
Location: 14241 - 15194 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnospira
Species
Lachnospira sp003537285
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.