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Cluster: Rep_2367_CGC22

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2367_c_1 Rep_2367_c_1_1390 1499408 1500325 + 3.A.1.105.9
pfam Rep_2367_c_1 Rep_2367_c_1_1391 1500325 1501572 + ABC2_membrane_3
CAZyme Rep_2367_c_1 Rep_2367_c_1_1392 1501622 1502491 - CE4
peptidase Rep_2367_c_1 Rep_2367_c_1_1393 1502612 1503859 - S11.UPW
TC Rep_2367_c_1 Rep_2367_c_1_1394 1503986 1504687 + 3.A.1.122.14
pfam Rep_2367_c_1 Rep_2367_c_1_1395 1504709 1507414 + FtsX | FtsX | MacB_PCD | MacB_PCD
TC Rep_2367_c_1 Rep_2367_c_1_1396 1507466 1508320 + 9.B.70.1.1
Gene ID: Rep_2367_c_1_1390
Type: TC
Location: 1499408 - 1500325 (+)
Gene ID: Rep_2367_c_1_1391
Type: pfam
Location: 1500325 - 1501572 (+)
Gene ID: Rep_2367_c_1_1392
Type: CAZyme
Location: 1501622 - 1502491 (-)
Gene ID: Rep_2367_c_1_1393
Type: peptidase
Location: 1502612 - 1503859 (-)
Gene ID: Rep_2367_c_1_1394
Type: TC
Location: 1503986 - 1504687 (+)
Gene ID: Rep_2367_c_1_1395
Type: pfam
Location: 1504709 - 1507414 (+)
Gene ID: Rep_2367_c_1_1396
Type: TC
Location: 1507466 - 1508320 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2367_c_1_1390 vegetarian > vegan 1.15857 0.02464

🧭 Explore Read Mapping of CGC

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