Cluster: Rep_2367_CGC2
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 4
- Substrate:
- Genome ID: Rep_2367
- CGC Family ID: CGCFAM_00002
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_2367_c_1 | Rep_2367_c_1_236 | 248171 | 249268 | - | GT4 |
| CAZyme | Rep_2367_c_1 | Rep_2367_c_1_237 | 249274 | 250437 | - | GT4 |
| pfam | Rep_2367_c_1 | Rep_2367_c_1_238 | 250469 | 251947 | - | LytR_cpsA_psr |
| TC | Rep_2367_c_1 | Rep_2367_c_1_239 | 251958 | 253427 | - | 9.B.18.1.2 |
| peptidase | Rep_2367_c_1 | Rep_2367_c_1_240 | 253501 | 254484 | - | C110.UPW |
| NULL(UNKNOWN) | Rep_2367_c_1 | Rep_2367_c_1_241 | 254681 | 254941 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_2367_c_1 | Rep_2367_c_1_242 | 255110 | 259594 | - | PL9_1 |
| CAZyme | Rep_2367_c_1 | Rep_2367_c_1_243 | 260016 | 265274 | - | PL9_1 |
| NULL(UNKNOWN) | Rep_2367_c_1 | Rep_2367_c_1_244 | 265724 | 265957 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | Rep_2367_c_1 | Rep_2367_c_1_245 | 266537 | 267610 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_2367_c_1 | Rep_2367_c_1_246 | 267629 | 269218 | - | 2.A.50.2.1 |
Gene ID: Rep_2367_c_1_236
Type: CAZyme
Location: 248171 - 249268 (-)
Type: CAZyme
Location: 248171 - 249268 (-)
Gene ID: Rep_2367_c_1_237
Type: CAZyme
Location: 249274 - 250437 (-)
Type: CAZyme
Location: 249274 - 250437 (-)
Gene ID: Rep_2367_c_1_238
Type: pfam
Location: 250469 - 251947 (-)
Type: pfam
Location: 250469 - 251947 (-)
Gene ID: Rep_2367_c_1_239
Type: TC
Location: 251958 - 253427 (-)
Type: TC
Location: 251958 - 253427 (-)
Gene ID: Rep_2367_c_1_240
Type: peptidase
Location: 253501 - 254484 (-)
Type: peptidase
Location: 253501 - 254484 (-)
Gene ID: Rep_2367_c_1_241
Type:
Location: 254681 - 254941 (-)
Type:
Location: 254681 - 254941 (-)
Gene ID: Rep_2367_c_1_242
Type: CAZyme
Location: 255110 - 259594 (-)
Type: CAZyme
Location: 255110 - 259594 (-)
Gene ID: Rep_2367_c_1_243
Type: CAZyme
Location: 260016 - 265274 (-)
Type: CAZyme
Location: 260016 - 265274 (-)
Gene ID: Rep_2367_c_1_244
Type:
Location: 265724 - 265957 (-)
Type:
Location: 265724 - 265957 (-)
Gene ID: Rep_2367_c_1_245
Type:
Location: 266537 - 267610 (-)
Type:
Location: 266537 - 267610 (-)
Gene ID: Rep_2367_c_1_246
Type: TC
Location: 267629 - 269218 (-)
Type: TC
Location: 267629 - 269218 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnospira
Species
Lachnospira sp003537285
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.