Cluster: Rep_2367_CGC19
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2367
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_2367_c_1 | Rep_2367_c_1_1237 | 1336790 | 1340650 | + | CE8 |
| TC | Rep_2367_c_1 | Rep_2367_c_1_1238 | 1340791 | 1341456 | + | 2.A.88.3.1 |
| TF | Rep_2367_c_1 | Rep_2367_c_1_1239 | 1341900 | 1342739 | + | 0037861 |
| TC | Rep_2367_c_1 | Rep_2367_c_1_1240 | 1343119 | 1344864 | + | 3.A.1.106.12 |
| TC | Rep_2367_c_1 | Rep_2367_c_1_1241 | 1344864 | 1346528 | + | 3.A.1.106.11 |
Gene ID: Rep_2367_c_1_1237
Type: CAZyme
Location: 1336790 - 1340650 (+)
Type: CAZyme
Location: 1336790 - 1340650 (+)
Gene ID: Rep_2367_c_1_1238
Type: TC
Location: 1340791 - 1341456 (+)
Type: TC
Location: 1340791 - 1341456 (+)
Gene ID: Rep_2367_c_1_1239
Type: TF
Location: 1341900 - 1342739 (+)
Type: TF
Location: 1341900 - 1342739 (+)
Gene ID: Rep_2367_c_1_1240
Type: TC
Location: 1343119 - 1344864 (+)
Type: TC
Location: 1343119 - 1344864 (+)
Gene ID: Rep_2367_c_1_1241
Type: TC
Location: 1344864 - 1346528 (+)
Type: TC
Location: 1344864 - 1346528 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Lachnospira
Species
Lachnospira sp003537285
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_2367_c_1_1238 | vegetarian > vegan | 1.00384 | 0.04290 |