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Cluster: Rep_2367_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2367_c_1 Rep_2367_c_1_1202 1287367 1288368 + 8.A.5.1.4
pfam Rep_2367_c_1 Rep_2367_c_1_1203 1288398 1289108 + Flavodoxin_4
pfam Rep_2367_c_1 Rep_2367_c_1_1204 1289186 1289638 + Flavodoxin_2 | FMN_red
CAZyme Rep_2367_c_1 Rep_2367_c_1_1205 1289659 1291464 + CE1
TC Rep_2367_c_1 Rep_2367_c_1_1206 1291623 1292510 + 8.A.5.1.4
pfam Rep_2367_c_1 Rep_2367_c_1_1207 1292534 1293211 + Flavodoxin_4
pfam Rep_2367_c_1 Rep_2367_c_1_1208 1293235 1293867 + Flavodoxin_2 | FMN_red
TC Rep_2367_c_1 Rep_2367_c_1_1209 1294035 1296632 + 3.A.9.1.2
TF Rep_2367_c_1 Rep_2367_c_1_1210 1296692 1296862 - Mga
TC Rep_2367_c_1 Rep_2367_c_1_1211 1297097 1299727 + 8.A.7.1.5
Gene ID: Rep_2367_c_1_1202
Type: TC
Location: 1287367 - 1288368 (+)
Gene ID: Rep_2367_c_1_1203
Type: pfam
Location: 1288398 - 1289108 (+)
Gene ID: Rep_2367_c_1_1204
Type: pfam
Location: 1289186 - 1289638 (+)
Gene ID: Rep_2367_c_1_1205
Type: CAZyme
Location: 1289659 - 1291464 (+)
Gene ID: Rep_2367_c_1_1206
Type: TC
Location: 1291623 - 1292510 (+)
Gene ID: Rep_2367_c_1_1207
Type: pfam
Location: 1292534 - 1293211 (+)
Gene ID: Rep_2367_c_1_1208
Type: pfam
Location: 1293235 - 1293867 (+)
Gene ID: Rep_2367_c_1_1209
Type: TC
Location: 1294035 - 1296632 (+)
Gene ID: Rep_2367_c_1_1210
Type: TF
Location: 1296692 - 1296862 (-)
Gene ID: Rep_2367_c_1_1211
Type: TC
Location: 1297097 - 1299727 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2367_c_1_1206 vegan > omnivore 1.41276 0.00455

🧭 Explore Read Mapping of CGC

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