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Cluster: Rep_2367_CGC15

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2367_c_1 Rep_2367_c_1_891 978568 979254 + 3.A.2.1.5
TC Rep_2367_c_1 Rep_2367_c_1_892 979301 979528 + 3.A.2.1.5
pfam Rep_2367_c_1 Rep_2367_c_1_893 979581 980033 + ATP-synt_B
pfam Rep_2367_c_1 Rep_2367_c_1_894 980011 980532 + OSCP
TC Rep_2367_c_1 Rep_2367_c_1_895 980538 982034 + 3.A.2.1.6
TC Rep_2367_c_1 Rep_2367_c_1_896 982070 982963 + 3.A.2.1.5
TC Rep_2367_c_1 Rep_2367_c_1_897 982984 984375 + 3.A.2.1.5
pfam Rep_2367_c_1 Rep_2367_c_1_898 984400 984813 + ATP-synt_DE | ATP-synt_DE_N
TC Rep_2367_c_1 Rep_2367_c_1_899 985044 985877 + 1.A.16.1.3
NULL(UNKNOWN) Rep_2367_c_1 Rep_2367_c_1_900 987220 987315 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_2367_c_1 Rep_2367_c_1_901 987439 988857 - 2.A.25.1.4
pfam Rep_2367_c_1 Rep_2367_c_1_902 989403 991073 + FTHFS
TC Rep_2367_c_1 Rep_2367_c_1_903 991611 993356 - 9.B.74.1.3
NULL(UNKNOWN) Rep_2367_c_1 Rep_2367_c_1_904 993353 993766 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_2367_c_1 Rep_2367_c_1_905 993782 995929 - 9.B.74.1.1
CAZyme Rep_2367_c_1 Rep_2367_c_1_906 996053 997861 + GT8 | GT8
Gene ID: Rep_2367_c_1_891
Type: TC
Location: 978568 - 979254 (+)
Gene ID: Rep_2367_c_1_892
Type: TC
Location: 979301 - 979528 (+)
Gene ID: Rep_2367_c_1_893
Type: pfam
Location: 979581 - 980033 (+)
Gene ID: Rep_2367_c_1_894
Type: pfam
Location: 980011 - 980532 (+)
Gene ID: Rep_2367_c_1_895
Type: TC
Location: 980538 - 982034 (+)
Gene ID: Rep_2367_c_1_896
Type: TC
Location: 982070 - 982963 (+)
Gene ID: Rep_2367_c_1_897
Type: TC
Location: 982984 - 984375 (+)
Gene ID: Rep_2367_c_1_898
Type: pfam
Location: 984400 - 984813 (+)
Gene ID: Rep_2367_c_1_899
Type: TC
Location: 985044 - 985877 (+)
Gene ID: Rep_2367_c_1_900
Type:
Location: 987220 - 987315 (+)
Gene ID: Rep_2367_c_1_901
Type: TC
Location: 987439 - 988857 (-)
Gene ID: Rep_2367_c_1_902
Type: pfam
Location: 989403 - 991073 (+)
Gene ID: Rep_2367_c_1_903
Type: TC
Location: 991611 - 993356 (-)
Gene ID: Rep_2367_c_1_904
Type:
Location: 993353 - 993766 (-)
Gene ID: Rep_2367_c_1_905
Type: TC
Location: 993782 - 995929 (-)
Gene ID: Rep_2367_c_1_906
Type: CAZyme
Location: 996053 - 997861 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2367_c_1_898 vegetarian > vegan 1.10166 0.04290
Rep_2367_c_1_899 vegetarian > vegan 1.29977 0.03571

🧭 Explore Read Mapping of CGC

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