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Cluster: Rep_2367_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2367_c_1 Rep_2367_c_1_544 615398 616453 + 3.A.1.6.1
TC Rep_2367_c_1 Rep_2367_c_1_545 616580 617437 - 2.A.36.2.1
TC Rep_2367_c_1 Rep_2367_c_1_546 617470 617784 - 2.A.36.2.1
pfam Rep_2367_c_1 Rep_2367_c_1_547 617844 619247 - bPH_5
TF Rep_2367_c_1 Rep_2367_c_1_548 619304 619687 - GntR
TC Rep_2367_c_1 Rep_2367_c_1_549 620335 621453 + 3.A.1.6.1
TC Rep_2367_c_1 Rep_2367_c_1_550 621477 622319 + 3.A.1.6.1
TC Rep_2367_c_1 Rep_2367_c_1_551 622334 623179 + 3.A.1.6.1
TC Rep_2367_c_1 Rep_2367_c_1_552 623212 624300 + 3.A.1.6.3
TC Rep_2367_c_1 Rep_2367_c_1_553 624354 626471 - 1.B.52.2.1
TC Rep_2367_c_1 Rep_2367_c_1_554 627699 629438 + 2.A.114.1.3
CAZyme Rep_2367_c_1 Rep_2367_c_1_555 629484 630719 - GH28
Gene ID: Rep_2367_c_1_544
Type: TC
Location: 615398 - 616453 (+)
Gene ID: Rep_2367_c_1_545
Type: TC
Location: 616580 - 617437 (-)
Gene ID: Rep_2367_c_1_546
Type: TC
Location: 617470 - 617784 (-)
Gene ID: Rep_2367_c_1_547
Type: pfam
Location: 617844 - 619247 (-)
Gene ID: Rep_2367_c_1_548
Type: TF
Location: 619304 - 619687 (-)
Gene ID: Rep_2367_c_1_549
Type: TC
Location: 620335 - 621453 (+)
Gene ID: Rep_2367_c_1_550
Type: TC
Location: 621477 - 622319 (+)
Gene ID: Rep_2367_c_1_551
Type: TC
Location: 622334 - 623179 (+)
Gene ID: Rep_2367_c_1_552
Type: TC
Location: 623212 - 624300 (+)
Gene ID: Rep_2367_c_1_553
Type: TC
Location: 624354 - 626471 (-)
Gene ID: Rep_2367_c_1_554
Type: TC
Location: 627699 - 629438 (+)
Gene ID: Rep_2367_c_1_555
Type: CAZyme
Location: 629484 - 630719 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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