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Cluster: Rep_2367_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2367_c_1 Rep_2367_c_1_28 31348 32868 + 3.A.1.3.15
TC Rep_2367_c_1 Rep_2367_c_1_29 32858 33604 + 3.A.1.3.25
pfam Rep_2367_c_1 Rep_2367_c_1_30 34249 34998 - PseudoU_synth_1 | PseudoU_synth_1
TC Rep_2367_c_1 Rep_2367_c_1_31 35099 36754 - 2.A.16.2.2
STP Rep_2367_c_1 Rep_2367_c_1_32 36758 38368 - GGDEF
TC Rep_2367_c_1 Rep_2367_c_1_33 38478 39527 - 3.A.15.2.1
STP Rep_2367_c_1 Rep_2367_c_1_34 39602 40243 - HhH-GPD
TC Rep_2367_c_1 Rep_2367_c_1_35 40247 41713 - 2.A.22.5.3
TC Rep_2367_c_1 Rep_2367_c_1_36 41787 43487 - 3.A.1.1.9
TC Rep_2367_c_1 Rep_2367_c_1_37 43492 44340 - 3.A.1.1.27
TC Rep_2367_c_1 Rep_2367_c_1_38 44337 45674 - 3.A.1.1.27
pfam Rep_2367_c_1 Rep_2367_c_1_39 45711 46964 - SBP_bac_8
TC Rep_2367_c_1 Rep_2367_c_1_40 47078 48835 - 9.B.33.1.1
TF Rep_2367_c_1 Rep_2367_c_1_41 48832 50376 - HTH_AraC
CAZyme Rep_2367_c_1 Rep_2367_c_1_42 50469 52748 - GT35
Gene ID: Rep_2367_c_1_28
Type: TC
Location: 31348 - 32868 (+)
Gene ID: Rep_2367_c_1_29
Type: TC
Location: 32858 - 33604 (+)
Gene ID: Rep_2367_c_1_30
Type: pfam
Location: 34249 - 34998 (-)
Gene ID: Rep_2367_c_1_31
Type: TC
Location: 35099 - 36754 (-)
Gene ID: Rep_2367_c_1_32
Type: STP
Location: 36758 - 38368 (-)
Gene ID: Rep_2367_c_1_33
Type: TC
Location: 38478 - 39527 (-)
Gene ID: Rep_2367_c_1_34
Type: STP
Location: 39602 - 40243 (-)
Gene ID: Rep_2367_c_1_35
Type: TC
Location: 40247 - 41713 (-)
Gene ID: Rep_2367_c_1_36
Type: TC
Location: 41787 - 43487 (-)
Gene ID: Rep_2367_c_1_37
Type: TC
Location: 43492 - 44340 (-)
Gene ID: Rep_2367_c_1_38
Type: TC
Location: 44337 - 45674 (-)
Gene ID: Rep_2367_c_1_39
Type: pfam
Location: 45711 - 46964 (-)
Gene ID: Rep_2367_c_1_40
Type: TC
Location: 47078 - 48835 (-)
Gene ID: Rep_2367_c_1_41
Type: TF
Location: 48832 - 50376 (-)
Gene ID: Rep_2367_c_1_42
Type: CAZyme
Location: 50469 - 52748 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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