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Cluster: Rep_234_CGC47

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_234_c_207 Rep_234_c_207_18 24650 26992 - GH3
TC Rep_234_c_207 Rep_234_c_207_19 27143 28840 - 3.A.1.120.6
pfam Rep_234_c_207 Rep_234_c_207_20 29312 31417 + TonB_dep_Rec_b-barrel | Plug
NULL(UNKNOWN) Rep_234_c_207 Rep_234_c_207_21 31459 32616 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_234_c_207 Rep_234_c_207_22 33266 33919 + 9.B.20.1.4
NULL(UNKNOWN) Rep_234_c_207 Rep_234_c_207_23 34123 34629 + NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_234_c_207 Rep_234_c_207_24 34782 35618 - Methyltransf_23
TC Rep_234_c_207 Rep_234_c_207_25 35763 37001 - 3.A.1.122.1
TC Rep_234_c_207 Rep_234_c_207_26 37013 37786 - 3.A.1.122.2
TC Rep_234_c_207 Rep_234_c_207_27 37811 38992 - 3.A.1.122.1
Gene ID: Rep_234_c_207_18
Type: CAZyme
Location: 24650 - 26992 (-)
Gene ID: Rep_234_c_207_19
Type: TC
Location: 27143 - 28840 (-)
Gene ID: Rep_234_c_207_20
Type: pfam
Location: 29312 - 31417 (+)
Gene ID: Rep_234_c_207_21
Type:
Location: 31459 - 32616 (+)
Gene ID: Rep_234_c_207_22
Type: TC
Location: 33266 - 33919 (+)
Gene ID: Rep_234_c_207_23
Type:
Location: 34123 - 34629 (+)
Gene ID: Rep_234_c_207_24
Type: pfam
Location: 34782 - 35618 (-)
Gene ID: Rep_234_c_207_25
Type: TC
Location: 35763 - 37001 (-)
Gene ID: Rep_234_c_207_26
Type: TC
Location: 37013 - 37786 (-)
Gene ID: Rep_234_c_207_27
Type: TC
Location: 37811 - 38992 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_234_c_207_22 vegetarian > vegan 1.21298 0.00424
Rep_234_c_207_27 vegetarian > vegan 2.92185 0.00424

🧭 Explore Read Mapping of CGC

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