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Cluster: Rep_234_CGC41

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_234_c_177 Rep_234_c_177_8 6392 8617 - GH10
pfam Rep_234_c_177 Rep_234_c_177_9 8659 9708 - BT_3987-like_N | DUF5627
pfam Rep_234_c_177 Rep_234_c_177_10 9729 11546 - SusD_RagB | SusD-like_3
TC Rep_234_c_177 Rep_234_c_177_11 11569 14436 - 1.B.14.6.1
pfam Rep_234_c_177 Rep_234_c_177_12 14481 16445 - SusD_RagB | SusD-like_3
TC Rep_234_c_177 Rep_234_c_177_13 16464 19610 - 1.B.14.6.1
CAZyme Rep_234_c_177 Rep_234_c_177_14 19737 21131 - GH5_21
TF Rep_234_c_177 Rep_234_c_177_15 21591 25697 + HTH_AraC | HTH_AraC
CAZyme Rep_234_c_177 Rep_234_c_177_16 25901 27571 + CBM91 | GH43_12
Gene ID: Rep_234_c_177_8
Type: CAZyme
Location: 6392 - 8617 (-)
Gene ID: Rep_234_c_177_9
Type: pfam
Location: 8659 - 9708 (-)
Gene ID: Rep_234_c_177_10
Type: pfam
Location: 9729 - 11546 (-)
Gene ID: Rep_234_c_177_11
Type: TC
Location: 11569 - 14436 (-)
Gene ID: Rep_234_c_177_12
Type: pfam
Location: 14481 - 16445 (-)
Gene ID: Rep_234_c_177_13
Type: TC
Location: 16464 - 19610 (-)
Gene ID: Rep_234_c_177_14
Type: CAZyme
Location: 19737 - 21131 (-)
Gene ID: Rep_234_c_177_15
Type: TF
Location: 21591 - 25697 (+)
Gene ID: Rep_234_c_177_16
Type: CAZyme
Location: 25901 - 27571 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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