Cluster: Rep_234_CGC4
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_234
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_234_c_27 | Rep_234_c_27_56 | 60223 | 62145 | - | 2.A.47.4.8 |
| pfam | Rep_234_c_27 | Rep_234_c_27_57 | 62529 | 63011 | + | LMWPc |
| NULL(UNKNOWN) | Rep_234_c_27 | Rep_234_c_27_58 | 62927 | 63160 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_234_c_27 | Rep_234_c_27_59 | 63144 | 65582 | - | GH31_3 |
| CAZyme | Rep_234_c_27 | Rep_234_c_27_60 | 65603 | 68044 | - | GH2 |
| CAZyme | Rep_234_c_27 | Rep_234_c_27_61 | 68189 | 71143 | - | GH31_4 |
Gene ID: Rep_234_c_27_56
Type: TC
Location: 60223 - 62145 (-)
Type: TC
Location: 60223 - 62145 (-)
Gene ID: Rep_234_c_27_57
Type: pfam
Location: 62529 - 63011 (+)
Type: pfam
Location: 62529 - 63011 (+)
Gene ID: Rep_234_c_27_58
Type:
Location: 62927 - 63160 (-)
Type:
Location: 62927 - 63160 (-)
Gene ID: Rep_234_c_27_59
Type: CAZyme
Location: 63144 - 65582 (-)
Type: CAZyme
Location: 63144 - 65582 (-)
Gene ID: Rep_234_c_27_60
Type: CAZyme
Location: 65603 - 68044 (-)
Type: CAZyme
Location: 65603 - 68044 (-)
Gene ID: Rep_234_c_27_61
Type: CAZyme
Location: 68189 - 71143 (-)
Type: CAZyme
Location: 68189 - 71143 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella sp900546535
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.