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Cluster: Rep_234_CGC36

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_234_c_162 Rep_234_c_162_9 7269 9278 + CBM32 | GH20
NULL(UNKNOWN) Rep_234_c_162 Rep_234_c_162_10 9477 9755 + NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) Rep_234_c_162 Rep_234_c_162_11 9758 10099 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_234_c_162 Rep_234_c_162_12 10225 11277 - GH9
pfam Rep_234_c_162 Rep_234_c_162_13 11434 11955 - CelD_N
CAZyme Rep_234_c_162 Rep_234_c_162_14 12145 14439 - GH2
TC Rep_234_c_162 Rep_234_c_162_15 14782 16314 - 2.A.35.1.3
pfam Rep_234_c_162 Rep_234_c_162_16 16597 17361 + H2O2_YaaD
pfam Rep_234_c_162 Rep_234_c_162_17 17381 18223 - S1_2 | CvfB_WH
TC Rep_234_c_162 Rep_234_c_162_18 18220 18966 - 3.A.1.125.1
CAZyme Rep_234_c_162 Rep_234_c_162_19 19129 20520 - GH28
CAZyme Rep_234_c_162 Rep_234_c_162_20 20652 21791 - GH105
CAZyme Rep_234_c_162 Rep_234_c_162_21 21913 24489 - GH106
NULL(UNKNOWN) Rep_234_c_162 Rep_234_c_162_22 24722 25039 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_234_c_162 Rep_234_c_162_23 24981 28091 - GH2
pfam Rep_234_c_162 Rep_234_c_162_24 28374 29183 + Aldolase_II
pfam Rep_234_c_162 Rep_234_c_162_25 29443 29760 - rhaM
CAZyme Rep_234_c_162 Rep_234_c_162_26 29829 31451 - GH27
TC Rep_234_c_162 Rep_234_c_162_27 31569 32600 - 2.A.7.6.1
Gene ID: Rep_234_c_162_9
Type: CAZyme
Location: 7269 - 9278 (+)
Gene ID: Rep_234_c_162_10
Type:
Location: 9477 - 9755 (+)
Gene ID: Rep_234_c_162_11
Type:
Location: 9758 - 10099 (+)
Gene ID: Rep_234_c_162_12
Type: CAZyme
Location: 10225 - 11277 (-)
Gene ID: Rep_234_c_162_13
Type: pfam
Location: 11434 - 11955 (-)
Gene ID: Rep_234_c_162_14
Type: CAZyme
Location: 12145 - 14439 (-)
Gene ID: Rep_234_c_162_15
Type: TC
Location: 14782 - 16314 (-)
Gene ID: Rep_234_c_162_16
Type: pfam
Location: 16597 - 17361 (+)
Gene ID: Rep_234_c_162_17
Type: pfam
Location: 17381 - 18223 (-)
Gene ID: Rep_234_c_162_18
Type: TC
Location: 18220 - 18966 (-)
Gene ID: Rep_234_c_162_19
Type: CAZyme
Location: 19129 - 20520 (-)
Gene ID: Rep_234_c_162_20
Type: CAZyme
Location: 20652 - 21791 (-)
Gene ID: Rep_234_c_162_21
Type: CAZyme
Location: 21913 - 24489 (-)
Gene ID: Rep_234_c_162_22
Type:
Location: 24722 - 25039 (+)
Gene ID: Rep_234_c_162_23
Type: CAZyme
Location: 24981 - 28091 (-)
Gene ID: Rep_234_c_162_24
Type: pfam
Location: 28374 - 29183 (+)
Gene ID: Rep_234_c_162_25
Type: pfam
Location: 29443 - 29760 (-)
Gene ID: Rep_234_c_162_26
Type: CAZyme
Location: 29829 - 31451 (-)
Gene ID: Rep_234_c_162_27
Type: TC
Location: 31569 - 32600 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_234_c_162_11 vegetarian > omnivore 1.26725 0.01057
Rep_234_c_162_11 vegetarian > vegan 2.78152 0.00168
Rep_234_c_162_22 vegetarian > vegan 1.07123 0.00424
Rep_234_c_162_25 vegetarian > vegan 3.23020 0.00424
Rep_234_c_162_27 vegetarian > omnivore 1.14203 0.01057

🧭 Explore Read Mapping of CGC

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