Cluster: Rep_234_CGC3
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_234
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_234_c_20 | Rep_234_c_20_1 | 542 | 2149 | - | 1.B.9.4.2 |
| NULL(UNKNOWN) | Rep_234_c_20 | Rep_234_c_20_2 | 2182 | 3168 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_234_c_20 | Rep_234_c_20_3 | 3391 | 4263 | + | MTS | PrmA | Methyltransf_25 | Methyltransf_31 |
| CAZyme | Rep_234_c_20 | Rep_234_c_20_4 | 4368 | 5381 | - | GH25 |
Gene ID: Rep_234_c_20_1
Type: TC
Location: 542 - 2149 (-)
Type: TC
Location: 542 - 2149 (-)
Gene ID: Rep_234_c_20_2
Type:
Location: 2182 - 3168 (-)
Type:
Location: 2182 - 3168 (-)
Gene ID: Rep_234_c_20_3
Type: pfam
Location: 3391 - 4263 (+)
Type: pfam
Location: 3391 - 4263 (+)
Gene ID: Rep_234_c_20_4
Type: CAZyme
Location: 4368 - 5381 (-)
Type: CAZyme
Location: 4368 - 5381 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella sp900546535
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_234_c_20_1 | vegetarian > vegan | 2.10862 | 0.00424 |
| Rep_234_c_20_3 | vegetarian > vegan | 1.32408 | 0.00424 |