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Cluster: Rep_2349_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2349_c_5 Rep_2349_c_5_12 16431 17501 - 9.A.23.1.1
TF Rep_2349_c_5 Rep_2349_c_5_13 17516 18037 - HTH_11
NULL(UNKNOWN) Rep_2349_c_5 Rep_2349_c_5_14 18187 18456 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_2349_c_5 Rep_2349_c_5_15 18460 19383 + 2.A.19.5.2
CAZyme Rep_2349_c_5 Rep_2349_c_5_16 19435 20142 + CE4
TC Rep_2349_c_5 Rep_2349_c_5_17 20144 21523 - 2.A.38.1.1
TC Rep_2349_c_5 Rep_2349_c_5_18 21586 22965 - 2.A.38.1.1
pfam Rep_2349_c_5 Rep_2349_c_5_19 22996 23826 - PNP_UDP_1
STP Rep_2349_c_5 Rep_2349_c_5_20 23906 25198 - ACT
TC Rep_2349_c_5 Rep_2349_c_5_21 25305 25985 - 9.B.120.1.3
Gene ID: Rep_2349_c_5_12
Type: TC
Location: 16431 - 17501 (-)
Gene ID: Rep_2349_c_5_13
Type: TF
Location: 17516 - 18037 (-)
Gene ID: Rep_2349_c_5_14
Type:
Location: 18187 - 18456 (+)
Gene ID: Rep_2349_c_5_15
Type: TC
Location: 18460 - 19383 (+)
Gene ID: Rep_2349_c_5_16
Type: CAZyme
Location: 19435 - 20142 (+)
Gene ID: Rep_2349_c_5_17
Type: TC
Location: 20144 - 21523 (-)
Gene ID: Rep_2349_c_5_18
Type: TC
Location: 21586 - 22965 (-)
Gene ID: Rep_2349_c_5_19
Type: pfam
Location: 22996 - 23826 (-)
Gene ID: Rep_2349_c_5_20
Type: STP
Location: 23906 - 25198 (-)
Gene ID: Rep_2349_c_5_21
Type: TC
Location: 25305 - 25985 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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