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Cluster: Rep_2349_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2349_c_3 Rep_2349_c_3_1 54 971 + 3.A.1.14.10
TC Rep_2349_c_3 Rep_2349_c_3_2 968 1966 + 3.A.1.14.10
TC Rep_2349_c_3 Rep_2349_c_3_3 1956 2768 + 3.A.1.14.7
TC Rep_2349_c_3 Rep_2349_c_3_4 2758 4536 + 3.A.1.106.12
TC Rep_2349_c_3 Rep_2349_c_3_5 4536 6224 + 3.A.1.106.9
pfam Rep_2349_c_3 Rep_2349_c_3_6 6225 6653 + DUF454
TC Rep_2349_c_3 Rep_2349_c_3_7 6640 7407 + 3.A.1.105.9
pfam Rep_2349_c_3 Rep_2349_c_3_8 7410 8576 + ABC2_membrane | ABC2_membrane_3
pfam Rep_2349_c_3 Rep_2349_c_3_9 8563 9732 + ABC2_membrane_3
CAZyme Rep_2349_c_3 Rep_2349_c_3_10 9750 11405 + GH73
pfam Rep_2349_c_3 Rep_2349_c_3_11 11503 12834 - ELFV_dehydrog | ELFV_dehydrog_N
TC Rep_2349_c_3 Rep_2349_c_3_12 13115 14551 + 3.A.6.1.1
Gene ID: Rep_2349_c_3_1
Type: TC
Location: 54 - 971 (+)
Gene ID: Rep_2349_c_3_2
Type: TC
Location: 968 - 1966 (+)
Gene ID: Rep_2349_c_3_3
Type: TC
Location: 1956 - 2768 (+)
Gene ID: Rep_2349_c_3_4
Type: TC
Location: 2758 - 4536 (+)
Gene ID: Rep_2349_c_3_5
Type: TC
Location: 4536 - 6224 (+)
Gene ID: Rep_2349_c_3_6
Type: pfam
Location: 6225 - 6653 (+)
Gene ID: Rep_2349_c_3_7
Type: TC
Location: 6640 - 7407 (+)
Gene ID: Rep_2349_c_3_8
Type: pfam
Location: 7410 - 8576 (+)
Gene ID: Rep_2349_c_3_9
Type: pfam
Location: 8563 - 9732 (+)
Gene ID: Rep_2349_c_3_10
Type: CAZyme
Location: 9750 - 11405 (+)
Gene ID: Rep_2349_c_3_11
Type: pfam
Location: 11503 - 12834 (-)
Gene ID: Rep_2349_c_3_12
Type: TC
Location: 13115 - 14551 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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