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Cluster: Rep_2349_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2349_c_2 Rep_2349_c_2_36 35255 36331 + 3.A.1.11.8
TC Rep_2349_c_2 Rep_2349_c_2_37 36324 37142 + 3.A.1.11.8
TC Rep_2349_c_2 Rep_2349_c_2_38 37136 37918 + 3.A.1.11.2
TC Rep_2349_c_2 Rep_2349_c_2_39 37953 38999 + 3.A.1.11.7
TC Rep_2349_c_2 Rep_2349_c_2_40 39018 39662 + 3.A.1.12.8
TC Rep_2349_c_2 Rep_2349_c_2_41 39664 40647 + 3.A.1.12.8
TC Rep_2349_c_2 Rep_2349_c_2_42 40663 41391 + 3.A.1.12.3
pfam Rep_2349_c_2 Rep_2349_c_2_43 41486 42730 - DUF1015
CAZyme Rep_2349_c_2 Rep_2349_c_2_44 42955 44211 + GT2
Gene ID: Rep_2349_c_2_36
Type: TC
Location: 35255 - 36331 (+)
Gene ID: Rep_2349_c_2_37
Type: TC
Location: 36324 - 37142 (+)
Gene ID: Rep_2349_c_2_38
Type: TC
Location: 37136 - 37918 (+)
Gene ID: Rep_2349_c_2_39
Type: TC
Location: 37953 - 38999 (+)
Gene ID: Rep_2349_c_2_40
Type: TC
Location: 39018 - 39662 (+)
Gene ID: Rep_2349_c_2_41
Type: TC
Location: 39664 - 40647 (+)
Gene ID: Rep_2349_c_2_42
Type: TC
Location: 40663 - 41391 (+)
Gene ID: Rep_2349_c_2_43
Type: pfam
Location: 41486 - 42730 (-)
Gene ID: Rep_2349_c_2_44
Type: CAZyme
Location: 42955 - 44211 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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