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Cluster: Rep_2349_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2349_c_1 Rep_2349_c_1_37 41283 42647 - AA4
TC Rep_2349_c_1 Rep_2349_c_1_38 42653 43549 - 3.A.1.24.1
TC Rep_2349_c_1 Rep_2349_c_1_39 43572 44252 - 3.A.1.24.6
TC Rep_2349_c_1 Rep_2349_c_1_40 44245 45279 - 3.A.1.24.6
TF Rep_2349_c_1 Rep_2349_c_1_41 45445 46350 - HTH_1
pfam Rep_2349_c_1 Rep_2349_c_1_42 46350 47285 - AP_endonuc_2
CAZyme Rep_2349_c_1 Rep_2349_c_1_43 47336 48058 - CE4
STP Rep_2349_c_1 Rep_2349_c_1_44 48135 48929 - Sigma70_r3
pfam Rep_2349_c_1 Rep_2349_c_1_45 49027 49959 - Cadherin-like
CAZyme Rep_2349_c_1 Rep_2349_c_1_46 49975 52821 - GH73
TC Rep_2349_c_1 Rep_2349_c_1_47 53039 54868 + 5.A.1.6.1
Gene ID: Rep_2349_c_1_37
Type: CAZyme
Location: 41283 - 42647 (-)
Gene ID: Rep_2349_c_1_38
Type: TC
Location: 42653 - 43549 (-)
Gene ID: Rep_2349_c_1_39
Type: TC
Location: 43572 - 44252 (-)
Gene ID: Rep_2349_c_1_40
Type: TC
Location: 44245 - 45279 (-)
Gene ID: Rep_2349_c_1_41
Type: TF
Location: 45445 - 46350 (-)
Gene ID: Rep_2349_c_1_42
Type: pfam
Location: 46350 - 47285 (-)
Gene ID: Rep_2349_c_1_43
Type: CAZyme
Location: 47336 - 48058 (-)
Gene ID: Rep_2349_c_1_44
Type: STP
Location: 48135 - 48929 (-)
Gene ID: Rep_2349_c_1_45
Type: pfam
Location: 49027 - 49959 (-)
Gene ID: Rep_2349_c_1_46
Type: CAZyme
Location: 49975 - 52821 (-)
Gene ID: Rep_2349_c_1_47
Type: TC
Location: 53039 - 54868 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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