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Cluster: Rep_2349_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2349_c_12 Rep_2349_c_12_30 23239 25092 - GH13_4
TC Rep_2349_c_12 Rep_2349_c_12_31 25165 26253 - 3.A.1.1.22
pfam Rep_2349_c_12 Rep_2349_c_12_32 26284 27861 - GalP_UDP_transf | GalP_UDP_tr_C
pfam Rep_2349_c_12 Rep_2349_c_12_33 27806 28978 - GHMP_kinases_N | GHMP_kinases_C | GalKase_gal_bdg
CAZyme Rep_2349_c_12 Rep_2349_c_12_34 28978 30609 - GH13_31
CAZyme Rep_2349_c_12 Rep_2349_c_12_35 30615 32798 - GH36
TC Rep_2349_c_12 Rep_2349_c_12_36 32815 33651 - 3.A.1.1.28
TC Rep_2349_c_12 Rep_2349_c_12_37 33651 34526 - 3.A.1.1.28
STP Rep_2349_c_12 Rep_2349_c_12_38 34546 35829 - SBP_bac_1
TF Rep_2349_c_12 Rep_2349_c_12_39 36047 36898 + HTH_AraC | HTH_AraC
TC Rep_2349_c_12 Rep_2349_c_12_40 36983 37708 - 3.A.1.3.25
TC Rep_2349_c_12 Rep_2349_c_12_41 37695 38390 - 3.A.1.3.15
TC Rep_2349_c_12 Rep_2349_c_12_42 38414 39241 - 3.A.1.3.15
pfam Rep_2349_c_12 Rep_2349_c_12_43 39340 39987 - UPF0029 | DUF1949
CAZyme Rep_2349_c_12 Rep_2349_c_12_44 40121 42685 + GT51
pfam Rep_2349_c_12 Rep_2349_c_12_45 42736 43092 - SpoVAC_SpoVAEB
STP Rep_2349_c_12 Rep_2349_c_12_46 43197 44369 - Aminotran_1_2
TC Rep_2349_c_12 Rep_2349_c_12_47 44421 45461 - 9.A.11.1.1
TC Rep_2349_c_12 Rep_2349_c_12_48 45474 45920 - 9.A.11.1.1
pfam Rep_2349_c_12 Rep_2349_c_12_49 45935 46342 - SpoVAB
TC Rep_2349_c_12 Rep_2349_c_12_50 46346 46981 - 9.A.11.1.1
Gene ID: Rep_2349_c_12_30
Type: CAZyme
Location: 23239 - 25092 (-)
Gene ID: Rep_2349_c_12_31
Type: TC
Location: 25165 - 26253 (-)
Gene ID: Rep_2349_c_12_32
Type: pfam
Location: 26284 - 27861 (-)
Gene ID: Rep_2349_c_12_33
Type: pfam
Location: 27806 - 28978 (-)
Gene ID: Rep_2349_c_12_34
Type: CAZyme
Location: 28978 - 30609 (-)
Gene ID: Rep_2349_c_12_35
Type: CAZyme
Location: 30615 - 32798 (-)
Gene ID: Rep_2349_c_12_36
Type: TC
Location: 32815 - 33651 (-)
Gene ID: Rep_2349_c_12_37
Type: TC
Location: 33651 - 34526 (-)
Gene ID: Rep_2349_c_12_38
Type: STP
Location: 34546 - 35829 (-)
Gene ID: Rep_2349_c_12_39
Type: TF
Location: 36047 - 36898 (+)
Gene ID: Rep_2349_c_12_40
Type: TC
Location: 36983 - 37708 (-)
Gene ID: Rep_2349_c_12_41
Type: TC
Location: 37695 - 38390 (-)
Gene ID: Rep_2349_c_12_42
Type: TC
Location: 38414 - 39241 (-)
Gene ID: Rep_2349_c_12_43
Type: pfam
Location: 39340 - 39987 (-)
Gene ID: Rep_2349_c_12_44
Type: CAZyme
Location: 40121 - 42685 (+)
Gene ID: Rep_2349_c_12_45
Type: pfam
Location: 42736 - 43092 (-)
Gene ID: Rep_2349_c_12_46
Type: STP
Location: 43197 - 44369 (-)
Gene ID: Rep_2349_c_12_47
Type: TC
Location: 44421 - 45461 (-)
Gene ID: Rep_2349_c_12_48
Type: TC
Location: 45474 - 45920 (-)
Gene ID: Rep_2349_c_12_49
Type: pfam
Location: 45935 - 46342 (-)
Gene ID: Rep_2349_c_12_50
Type: TC
Location: 46346 - 46981 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2349_c_12_36 vegan > omnivore 1.14600 0.00701

🧭 Explore Read Mapping of CGC

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