Cluster: Rep_2349_CGC1
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 5
- Substrate:
- Genome ID: Rep_2349
- CGC Family ID: CGCFAM_09990
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2349_c_0 | Rep_2349_c_0_80 | 89800 | 91224 | - | 2.A.66.2.16 |
| CAZyme | Rep_2349_c_0 | Rep_2349_c_0_81 | 91241 | 92242 | - | GT2 |
| CAZyme | Rep_2349_c_0 | Rep_2349_c_0_82 | 92252 | 92974 | - | GT2 |
| NULL(UNKNOWN) | Rep_2349_c_0 | Rep_2349_c_0_83 | 92976 | 94385 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_2349_c_0 | Rep_2349_c_0_84 | 94399 | 95211 | - | Glycos_transf_2 |
| CAZyme | Rep_2349_c_0 | Rep_2349_c_0_85 | 95212 | 95985 | - | GT2 |
| TC | Rep_2349_c_0 | Rep_2349_c_0_86 | 95975 | 97375 | - | 9.B.18.1.3 |
| TC | Rep_2349_c_0 | Rep_2349_c_0_87 | 97492 | 99699 | - | 3.A.7.16.1 |
| TC | Rep_2349_c_0 | Rep_2349_c_0_88 | 99755 | 100750 | - | 1.A.33.1.5 |
| pfam | Rep_2349_c_0 | Rep_2349_c_0_89 | 100816 | 103470 | - | YfhO |
| CAZyme | Rep_2349_c_0 | Rep_2349_c_0_90 | 103474 | 104415 | - | GT2 |
| STP | Rep_2349_c_0 | Rep_2349_c_0_91 | 104577 | 104774 | - | HMA |
| TC | Rep_2349_c_0 | Rep_2349_c_0_92 | 104825 | 107410 | - | 3.A.3.5.15 |
| pfam | Rep_2349_c_0 | Rep_2349_c_0_93 | 107433 | 107741 | - | Trns_repr_metal |
| CAZyme | Rep_2349_c_0 | Rep_2349_c_0_94 | 107919 | 108938 | - | GT2 |
| TC | Rep_2349_c_0 | Rep_2349_c_0_95 | 109064 | 110353 | - | 2.A.1.24.4 |
Gene ID: Rep_2349_c_0_80
Type: TC
Location: 89800 - 91224 (-)
Type: TC
Location: 89800 - 91224 (-)
Gene ID: Rep_2349_c_0_81
Type: CAZyme
Location: 91241 - 92242 (-)
Type: CAZyme
Location: 91241 - 92242 (-)
Gene ID: Rep_2349_c_0_82
Type: CAZyme
Location: 92252 - 92974 (-)
Type: CAZyme
Location: 92252 - 92974 (-)
Gene ID: Rep_2349_c_0_83
Type:
Location: 92976 - 94385 (-)
Type:
Location: 92976 - 94385 (-)
Gene ID: Rep_2349_c_0_84
Type: pfam
Location: 94399 - 95211 (-)
Type: pfam
Location: 94399 - 95211 (-)
Gene ID: Rep_2349_c_0_85
Type: CAZyme
Location: 95212 - 95985 (-)
Type: CAZyme
Location: 95212 - 95985 (-)
Gene ID: Rep_2349_c_0_86
Type: TC
Location: 95975 - 97375 (-)
Type: TC
Location: 95975 - 97375 (-)
Gene ID: Rep_2349_c_0_87
Type: TC
Location: 97492 - 99699 (-)
Type: TC
Location: 97492 - 99699 (-)
Gene ID: Rep_2349_c_0_88
Type: TC
Location: 99755 - 100750 (-)
Type: TC
Location: 99755 - 100750 (-)
Gene ID: Rep_2349_c_0_89
Type: pfam
Location: 100816 - 103470 (-)
Type: pfam
Location: 100816 - 103470 (-)
Gene ID: Rep_2349_c_0_90
Type: CAZyme
Location: 103474 - 104415 (-)
Type: CAZyme
Location: 103474 - 104415 (-)
Gene ID: Rep_2349_c_0_91
Type: STP
Location: 104577 - 104774 (-)
Type: STP
Location: 104577 - 104774 (-)
Gene ID: Rep_2349_c_0_92
Type: TC
Location: 104825 - 107410 (-)
Type: TC
Location: 104825 - 107410 (-)
Gene ID: Rep_2349_c_0_93
Type: pfam
Location: 107433 - 107741 (-)
Type: pfam
Location: 107433 - 107741 (-)
Gene ID: Rep_2349_c_0_94
Type: CAZyme
Location: 107919 - 108938 (-)
Type: CAZyme
Location: 107919 - 108938 (-)
Gene ID: Rep_2349_c_0_95
Type: TC
Location: 109064 - 110353 (-)
Type: TC
Location: 109064 - 110353 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Frisingicoccus
Species
Frisingicoccus sp902489645
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.