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Cluster: Rep_2338_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2338_c_3 Rep_2338_c_3_8 8017 8769 - 3.A.1.7.5
TC Rep_2338_c_3 Rep_2338_c_3_9 8774 9628 - 3.A.1.7.5
TC Rep_2338_c_3 Rep_2338_c_3_10 9621 10484 - 3.A.1.7.5
pfam Rep_2338_c_3 Rep_2338_c_3_11 10509 11474 - PBP_like_2 | PBP_like_2
pfam Rep_2338_c_3 Rep_2338_c_3_12 11672 11839 - DUF6903
TC Rep_2338_c_3 Rep_2338_c_3_13 11852 12727 - 3.A.1.1.18
TC Rep_2338_c_3 Rep_2338_c_3_14 12743 13633 - 3.A.1.1.18
pfam Rep_2338_c_3 Rep_2338_c_3_15 13720 15126 - SBP_bac_1
TF Rep_2338_c_3 Rep_2338_c_3_16 15345 16208 + HTH_AraC | HTH_AraC
CAZyme Rep_2338_c_3 Rep_2338_c_3_17 16256 18418 - GH112
Gene ID: Rep_2338_c_3_8
Type: TC
Location: 8017 - 8769 (-)
Gene ID: Rep_2338_c_3_9
Type: TC
Location: 8774 - 9628 (-)
Gene ID: Rep_2338_c_3_10
Type: TC
Location: 9621 - 10484 (-)
Gene ID: Rep_2338_c_3_11
Type: pfam
Location: 10509 - 11474 (-)
Gene ID: Rep_2338_c_3_12
Type: pfam
Location: 11672 - 11839 (-)
Gene ID: Rep_2338_c_3_13
Type: TC
Location: 11852 - 12727 (-)
Gene ID: Rep_2338_c_3_14
Type: TC
Location: 12743 - 13633 (-)
Gene ID: Rep_2338_c_3_15
Type: pfam
Location: 13720 - 15126 (-)
Gene ID: Rep_2338_c_3_16
Type: TF
Location: 15345 - 16208 (+)
Gene ID: Rep_2338_c_3_17
Type: CAZyme
Location: 16256 - 18418 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2338_c_3_17 vegan > omnivore 1.12487 0.01057

🧭 Explore Read Mapping of CGC

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