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Cluster: Rep_2338_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2338_c_1 Rep_2338_c_1_47 53975 55549 + 2.A.66.2.14
TC Rep_2338_c_1 Rep_2338_c_1_48 55712 58264 + 3.A.3.2.21
TC Rep_2338_c_1 Rep_2338_c_1_49 58765 61035 + 3.A.7.16.1
CAZyme Rep_2338_c_1 Rep_2338_c_1_50 61135 62265 + CE4
pfam Rep_2338_c_1 Rep_2338_c_1_51 62391 63521 + GLF | NAD_binding_8
TC Rep_2338_c_1 Rep_2338_c_1_52 63541 64992 + 9.B.18.1.3
CAZyme Rep_2338_c_1 Rep_2338_c_1_53 65003 65764 + GT2
CAZyme Rep_2338_c_1 Rep_2338_c_1_54 65782 66720 + GT2
CAZyme Rep_2338_c_1 Rep_2338_c_1_55 66724 67992 + GT4
TC Rep_2338_c_1 Rep_2338_c_1_56 67997 68773 + 3.A.1.103.4
TC Rep_2338_c_1 Rep_2338_c_1_57 68773 70047 + 3.A.1.103.4
pfam Rep_2338_c_1 Rep_2338_c_1_58 70066 71091 + MetW | Methyltransf_11 | Methyltransf_23
NULL(UNKNOWN) Rep_2338_c_1 Rep_2338_c_1_59 71108 71596 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_2338_c_1 Rep_2338_c_1_60 71593 72663 + GT4
CAZyme Rep_2338_c_1 Rep_2338_c_1_61 72667 73866 + GT4
CAZyme Rep_2338_c_1 Rep_2338_c_1_62 73863 75059 + GT4
pfam Rep_2338_c_1 Rep_2338_c_1_63 75074 76798 + DUF6311
CAZyme Rep_2338_c_1 Rep_2338_c_1_64 76823 77557 + GT2
Gene ID: Rep_2338_c_1_47
Type: TC
Location: 53975 - 55549 (+)
Gene ID: Rep_2338_c_1_48
Type: TC
Location: 55712 - 58264 (+)
Gene ID: Rep_2338_c_1_49
Type: TC
Location: 58765 - 61035 (+)
Gene ID: Rep_2338_c_1_50
Type: CAZyme
Location: 61135 - 62265 (+)
Gene ID: Rep_2338_c_1_51
Type: pfam
Location: 62391 - 63521 (+)
Gene ID: Rep_2338_c_1_52
Type: TC
Location: 63541 - 64992 (+)
Gene ID: Rep_2338_c_1_53
Type: CAZyme
Location: 65003 - 65764 (+)
Gene ID: Rep_2338_c_1_54
Type: CAZyme
Location: 65782 - 66720 (+)
Gene ID: Rep_2338_c_1_55
Type: CAZyme
Location: 66724 - 67992 (+)
Gene ID: Rep_2338_c_1_56
Type: TC
Location: 67997 - 68773 (+)
Gene ID: Rep_2338_c_1_57
Type: TC
Location: 68773 - 70047 (+)
Gene ID: Rep_2338_c_1_58
Type: pfam
Location: 70066 - 71091 (+)
Gene ID: Rep_2338_c_1_59
Type:
Location: 71108 - 71596 (+)
Gene ID: Rep_2338_c_1_60
Type: CAZyme
Location: 71593 - 72663 (+)
Gene ID: Rep_2338_c_1_61
Type: CAZyme
Location: 72667 - 73866 (+)
Gene ID: Rep_2338_c_1_62
Type: CAZyme
Location: 73863 - 75059 (+)
Gene ID: Rep_2338_c_1_63
Type: pfam
Location: 75074 - 76798 (+)
Gene ID: Rep_2338_c_1_64
Type: CAZyme
Location: 76823 - 77557 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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