Cluster: Rep_2338_CGC3
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2338
- CGC Family ID: CGCFAM_01532
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_2338_c_0 | Rep_2338_c_0_64 | 68672 | 70192 | - | GH77 |
| NULL(UNKNOWN) | Rep_2338_c_0 | Rep_2338_c_0_65 | 70351 | 70764 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | Rep_2338_c_0 | Rep_2338_c_0_66 | 70962 | 71495 | + | HTH_3 |
| TC | Rep_2338_c_0 | Rep_2338_c_0_67 | 71517 | 72560 | + | 3.A.1.11.8 |
| TC | Rep_2338_c_0 | Rep_2338_c_0_68 | 72560 | 73381 | + | 3.A.1.11.1 |
| TC | Rep_2338_c_0 | Rep_2338_c_0_69 | 73383 | 74186 | + | 3.A.1.11.2 |
| TC | Rep_2338_c_0 | Rep_2338_c_0_70 | 74190 | 75227 | + | 3.A.1.11.7 |
Gene ID: Rep_2338_c_0_64
Type: CAZyme
Location: 68672 - 70192 (-)
Type: CAZyme
Location: 68672 - 70192 (-)
Gene ID: Rep_2338_c_0_65
Type:
Location: 70351 - 70764 (+)
Type:
Location: 70351 - 70764 (+)
Gene ID: Rep_2338_c_0_66
Type: TF
Location: 70962 - 71495 (+)
Type: TF
Location: 70962 - 71495 (+)
Gene ID: Rep_2338_c_0_67
Type: TC
Location: 71517 - 72560 (+)
Type: TC
Location: 71517 - 72560 (+)
Gene ID: Rep_2338_c_0_68
Type: TC
Location: 72560 - 73381 (+)
Type: TC
Location: 72560 - 73381 (+)
Gene ID: Rep_2338_c_0_69
Type: TC
Location: 73383 - 74186 (+)
Type: TC
Location: 73383 - 74186 (+)
Gene ID: Rep_2338_c_0_70
Type: TC
Location: 74190 - 75227 (+)
Type: TC
Location: 74190 - 75227 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Scybalocola
Species
Scybalocola sp902489925
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.