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Cluster: Rep_2338_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2338_c_0 Rep_2338_c_0_35 38972 40039 + 3.A.1.2.17
TC Rep_2338_c_0 Rep_2338_c_0_36 40118 41644 + 3.A.1.2.17
TC Rep_2338_c_0 Rep_2338_c_0_37 41641 42672 + 3.A.1.2.12
TC Rep_2338_c_0 Rep_2338_c_0_38 42685 43626 + 3.A.1.2.18
peptidase Rep_2338_c_0 Rep_2338_c_0_39 43665 45050 + M38.UNW
TF Rep_2338_c_0 Rep_2338_c_0_40 45053 45928 - HTH_AraC | HTH_AraC
TC Rep_2338_c_0 Rep_2338_c_0_41 46102 47379 + 3.A.1.1.28
TC Rep_2338_c_0 Rep_2338_c_0_42 47404 48276 + 3.A.1.1.28
TC Rep_2338_c_0 Rep_2338_c_0_43 48273 49112 + 3.A.1.1.28
CAZyme Rep_2338_c_0 Rep_2338_c_0_44 49139 51325 + GH36
Gene ID: Rep_2338_c_0_35
Type: TC
Location: 38972 - 40039 (+)
Gene ID: Rep_2338_c_0_36
Type: TC
Location: 40118 - 41644 (+)
Gene ID: Rep_2338_c_0_37
Type: TC
Location: 41641 - 42672 (+)
Gene ID: Rep_2338_c_0_38
Type: TC
Location: 42685 - 43626 (+)
Gene ID: Rep_2338_c_0_39
Type: peptidase
Location: 43665 - 45050 (+)
Gene ID: Rep_2338_c_0_40
Type: TF
Location: 45053 - 45928 (-)
Gene ID: Rep_2338_c_0_41
Type: TC
Location: 46102 - 47379 (+)
Gene ID: Rep_2338_c_0_42
Type: TC
Location: 47404 - 48276 (+)
Gene ID: Rep_2338_c_0_43
Type: TC
Location: 48273 - 49112 (+)
Gene ID: Rep_2338_c_0_44
Type: CAZyme
Location: 49139 - 51325 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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