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Cluster: Rep_2338_CGC19

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2338_c_29 Rep_2338_c_29_3 1446 3263 + 8.A.59.2.1
TF Rep_2338_c_29 Rep_2338_c_29_4 3272 4783 + HTH_AraC
STP Rep_2338_c_29 Rep_2338_c_29_5 4780 6021 + SBP_bac_1
TC Rep_2338_c_29 Rep_2338_c_29_6 6190 7590 + 3.A.1.1.20
TC Rep_2338_c_29 Rep_2338_c_29_7 7660 8547 + 3.A.1.1.38
TC Rep_2338_c_29 Rep_2338_c_29_8 8560 9381 + 3.A.1.1.12
CAZyme Rep_2338_c_29 Rep_2338_c_29_9 9388 12570 + GH38
CAZyme Rep_2338_c_29 Rep_2338_c_29_10 12567 15002 + GH2
Gene ID: Rep_2338_c_29_3
Type: TC
Location: 1446 - 3263 (+)
Gene ID: Rep_2338_c_29_4
Type: TF
Location: 3272 - 4783 (+)
Gene ID: Rep_2338_c_29_5
Type: STP
Location: 4780 - 6021 (+)
Gene ID: Rep_2338_c_29_6
Type: TC
Location: 6190 - 7590 (+)
Gene ID: Rep_2338_c_29_7
Type: TC
Location: 7660 - 8547 (+)
Gene ID: Rep_2338_c_29_8
Type: TC
Location: 8560 - 9381 (+)
Gene ID: Rep_2338_c_29_9
Type: CAZyme
Location: 9388 - 12570 (+)
Gene ID: Rep_2338_c_29_10
Type: CAZyme
Location: 12567 - 15002 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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