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Cluster: Rep_2338_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2338_c_14 Rep_2338_c_14_2 360 1241 + 3.A.1.1.45
TC Rep_2338_c_14 Rep_2338_c_14_3 1238 2065 + 3.A.1.1.45
STP Rep_2338_c_14 Rep_2338_c_14_4 2093 3373 + SBP_bac_1
CAZyme Rep_2338_c_14 Rep_2338_c_14_5 3466 5802 + GH3
pfam Rep_2338_c_14 Rep_2338_c_14_6 5880 9104 - MGS | ATP-grasp | ATP-grasp | CPSase_L_D2 | CPSase_L_D2 | CPSase_L_D3 | Dala_Dala_lig_C | Dala_Dala_lig_C | ATPgrasp_Ter
pfam Rep_2338_c_14 Rep_2338_c_14_7 9377 10708 - ELFV_dehydrog | ELFV_dehydrog_N
TC Rep_2338_c_14 Rep_2338_c_14_8 11093 12463 + 3.A.6.3.1
Gene ID: Rep_2338_c_14_2
Type: TC
Location: 360 - 1241 (+)
Gene ID: Rep_2338_c_14_3
Type: TC
Location: 1238 - 2065 (+)
Gene ID: Rep_2338_c_14_4
Type: STP
Location: 2093 - 3373 (+)
Gene ID: Rep_2338_c_14_5
Type: CAZyme
Location: 3466 - 5802 (+)
Gene ID: Rep_2338_c_14_6
Type: pfam
Location: 5880 - 9104 (-)
Gene ID: Rep_2338_c_14_7
Type: pfam
Location: 9377 - 10708 (-)
Gene ID: Rep_2338_c_14_8
Type: TC
Location: 11093 - 12463 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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