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Cluster: Rep_230_CGC20

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_230_c_128 Rep_230_c_128_3 3283 5487 - GH10
pfam Rep_230_c_128 Rep_230_c_128_4 5502 6485 - BT_3987-like_N | DUF5627
pfam Rep_230_c_128 Rep_230_c_128_5 6521 8332 - SusD_RagB | SusD-like_3
TC Rep_230_c_128 Rep_230_c_128_6 8355 11192 - 1.B.14.6.1
pfam Rep_230_c_128 Rep_230_c_128_7 11248 13215 - SusD_RagB | SusD-like_3
TC Rep_230_c_128 Rep_230_c_128_8 13229 16384 - 1.B.14.6.1
CAZyme Rep_230_c_128 Rep_230_c_128_9 16506 17906 - GH5_21
TF Rep_230_c_128 Rep_230_c_128_10 18324 22493 + HTH_AraC | HTH_AraC
CAZyme Rep_230_c_128 Rep_230_c_128_11 22701 24371 + CBM91 | GH43_12
Gene ID: Rep_230_c_128_3
Type: CAZyme
Location: 3283 - 5487 (-)
Gene ID: Rep_230_c_128_4
Type: pfam
Location: 5502 - 6485 (-)
Gene ID: Rep_230_c_128_5
Type: pfam
Location: 6521 - 8332 (-)
Gene ID: Rep_230_c_128_6
Type: TC
Location: 8355 - 11192 (-)
Gene ID: Rep_230_c_128_7
Type: pfam
Location: 11248 - 13215 (-)
Gene ID: Rep_230_c_128_8
Type: TC
Location: 13229 - 16384 (-)
Gene ID: Rep_230_c_128_9
Type: CAZyme
Location: 16506 - 17906 (-)
Gene ID: Rep_230_c_128_10
Type: TF
Location: 18324 - 22493 (+)
Gene ID: Rep_230_c_128_11
Type: CAZyme
Location: 22701 - 24371 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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