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Cluster: Rep_230_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_230_c_102 Rep_230_c_102_7 7583 8830 - 3.A.1.122.2
TC Rep_230_c_102 Rep_230_c_102_8 8907 10166 - 3.A.1.122.2
TC Rep_230_c_102 Rep_230_c_102_9 10182 10898 - 3.A.1.122.14
TF Rep_230_c_102 Rep_230_c_102_10 11060 11431 - GntR
NULL(UNKNOWN) Rep_230_c_102 Rep_230_c_102_11 11451 12293 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_230_c_102 Rep_230_c_102_12 12307 13131 - 3.A.1.132.6
TC Rep_230_c_102 Rep_230_c_102_13 13374 14030 - 1.C.113.1.3
CAZyme Rep_230_c_102 Rep_230_c_102_14 14360 16555 + GH36
Gene ID: Rep_230_c_102_7
Type: TC
Location: 7583 - 8830 (-)
Gene ID: Rep_230_c_102_8
Type: TC
Location: 8907 - 10166 (-)
Gene ID: Rep_230_c_102_9
Type: TC
Location: 10182 - 10898 (-)
Gene ID: Rep_230_c_102_10
Type: TF
Location: 11060 - 11431 (-)
Gene ID: Rep_230_c_102_11
Type:
Location: 11451 - 12293 (-)
Gene ID: Rep_230_c_102_12
Type: TC
Location: 12307 - 13131 (-)
Gene ID: Rep_230_c_102_13
Type: TC
Location: 13374 - 14030 (-)
Gene ID: Rep_230_c_102_14
Type: CAZyme
Location: 14360 - 16555 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_230_c_102_11 vegan > omnivore 1.50069 0.04084

🧭 Explore Read Mapping of CGC

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