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Cluster: Rep_2300_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2300_c_9 Rep_2300_c_9_27 23192 29026 + GH43_22 | GH43_27
CAZyme Rep_2300_c_9 Rep_2300_c_9_28 29030 30952 + GH43_29
pfam Rep_2300_c_9 Rep_2300_c_9_29 30981 33923 + Laminin_G_3 | Laminin_G_3 | aBig_2
CAZyme Rep_2300_c_9 Rep_2300_c_9_30 34004 37045 + GH43_22
TC Rep_2300_c_9 Rep_2300_c_9_31 37242 38303 + 3.A.1.2.14
TF Rep_2300_c_9 Rep_2300_c_9_32 38321 39940 + HTH_AraC | HTH_AraC
TC Rep_2300_c_9 Rep_2300_c_9_33 39944 41425 + 8.A.59.2.1
TC Rep_2300_c_9 Rep_2300_c_9_34 41573 42568 + 3.A.1.2.1
TC Rep_2300_c_9 Rep_2300_c_9_35 42690 44204 + 3.A.1.2.23
TC Rep_2300_c_9 Rep_2300_c_9_36 44207 45271 + 3.A.1.2.14
TC Rep_2300_c_9 Rep_2300_c_9_37 45273 46322 + 3.A.1.2.14
pfam Rep_2300_c_9 Rep_2300_c_9_38 46337 47821 + Fucose_iso_C
pfam Rep_2300_c_9 Rep_2300_c_9_39 48065 48640 + ECF-ribofla_trS
TC Rep_2300_c_9 Rep_2300_c_9_40 48663 50372 + 3.A.1.29.1
Gene ID: Rep_2300_c_9_27
Type: CAZyme
Location: 23192 - 29026 (+)
Gene ID: Rep_2300_c_9_28
Type: CAZyme
Location: 29030 - 30952 (+)
Gene ID: Rep_2300_c_9_29
Type: pfam
Location: 30981 - 33923 (+)
Gene ID: Rep_2300_c_9_30
Type: CAZyme
Location: 34004 - 37045 (+)
Gene ID: Rep_2300_c_9_31
Type: TC
Location: 37242 - 38303 (+)
Gene ID: Rep_2300_c_9_32
Type: TF
Location: 38321 - 39940 (+)
Gene ID: Rep_2300_c_9_33
Type: TC
Location: 39944 - 41425 (+)
Gene ID: Rep_2300_c_9_34
Type: TC
Location: 41573 - 42568 (+)
Gene ID: Rep_2300_c_9_35
Type: TC
Location: 42690 - 44204 (+)
Gene ID: Rep_2300_c_9_36
Type: TC
Location: 44207 - 45271 (+)
Gene ID: Rep_2300_c_9_37
Type: TC
Location: 45273 - 46322 (+)
Gene ID: Rep_2300_c_9_38
Type: pfam
Location: 46337 - 47821 (+)
Gene ID: Rep_2300_c_9_39
Type: pfam
Location: 48065 - 48640 (+)
Gene ID: Rep_2300_c_9_40
Type: TC
Location: 48663 - 50372 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2300_c_9_34 vegetarian > vegan 1.12685 0.02695

🧭 Explore Read Mapping of CGC

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