Cluster: Rep_2300_CGC3
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_2300
- CGC Family ID: CGCFAM_04036
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2300_c_6 | Rep_2300_c_6_20 | 19278 | 21116 | + | 3.A.25.1.1 |
| CAZyme | Rep_2300_c_6 | Rep_2300_c_6_21 | 21109 | 23172 | + | CBM34 | GH13_39 |
| pfam | Rep_2300_c_6 | Rep_2300_c_6_22 | 23254 | 25161 | + | tRNA-synt_1 | tRNA-synt_1 | tRNA_bind | tRNA-synt_1g | tRNA-synt_1g | Anticodon_3 |
| CAZyme | Rep_2300_c_6 | Rep_2300_c_6_23 | 25495 | 26679 | + | CBM50 |
Gene ID: Rep_2300_c_6_20
Type: TC
Location: 19278 - 21116 (+)
Type: TC
Location: 19278 - 21116 (+)
Gene ID: Rep_2300_c_6_21
Type: CAZyme
Location: 21109 - 23172 (+)
Type: CAZyme
Location: 21109 - 23172 (+)
Gene ID: Rep_2300_c_6_22
Type: pfam
Location: 23254 - 25161 (+)
Type: pfam
Location: 23254 - 25161 (+)
Gene ID: Rep_2300_c_6_23
Type: CAZyme
Location: 25495 - 26679 (+)
Type: CAZyme
Location: 25495 - 26679 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Schaedlerella
Species
Schaedlerella sp905203555
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.