Cluster: Rep_2300_CGC26
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_2300
- CGC Family ID: CGCFAM_01489
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2300_c_57 | Rep_2300_c_57_4 | 4178 | 5500 | + | 2.A.2.3.2 |
| CAZyme | Rep_2300_c_57 | Rep_2300_c_57_5 | 5506 | 8169 | + | CBM67 | GH78 |
| TF | Rep_2300_c_57 | Rep_2300_c_57_6 | 8262 | 9278 | - | LacI |
| CAZyme | Rep_2300_c_57 | Rep_2300_c_57_7 | 9408 | 11750 | + | GT35 |
| CAZyme | Rep_2300_c_57 | Rep_2300_c_57_8 | 11762 | 13228 | + | GH77 |
Gene ID: Rep_2300_c_57_4
Type: TC
Location: 4178 - 5500 (+)
Type: TC
Location: 4178 - 5500 (+)
Gene ID: Rep_2300_c_57_5
Type: CAZyme
Location: 5506 - 8169 (+)
Type: CAZyme
Location: 5506 - 8169 (+)
Gene ID: Rep_2300_c_57_6
Type: TF
Location: 8262 - 9278 (-)
Type: TF
Location: 8262 - 9278 (-)
Gene ID: Rep_2300_c_57_7
Type: CAZyme
Location: 9408 - 11750 (+)
Type: CAZyme
Location: 9408 - 11750 (+)
Gene ID: Rep_2300_c_57_8
Type: CAZyme
Location: 11762 - 13228 (+)
Type: CAZyme
Location: 11762 - 13228 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Schaedlerella
Species
Schaedlerella sp905203555
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.