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Cluster: Rep_2300_CGC24

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2300_c_50 Rep_2300_c_50_5 3895 5649 - 8.A.59.2.1
CAZyme Rep_2300_c_50 Rep_2300_c_50_6 5671 6990 - GH29
TC Rep_2300_c_50 Rep_2300_c_50_7 7009 7827 - 3.A.1.1.47
TC Rep_2300_c_50 Rep_2300_c_50_8 7841 8752 - 3.A.1.1.47
TC Rep_2300_c_50 Rep_2300_c_50_9 8832 10175 - 3.A.1.1.47
STP Rep_2300_c_50 Rep_2300_c_50_10 10370 11665 - SBP_bac_1
pfam Rep_2300_c_50 Rep_2300_c_50_11 11719 12969 - GFO_IDH_MocA | GFO_IDH_MocA_C | GFO_IDH_MocA_C3
CAZyme Rep_2300_c_50 Rep_2300_c_50_12 12991 19695 - CBM51 | CBM51 | GH98 | GH98
Gene ID: Rep_2300_c_50_5
Type: TC
Location: 3895 - 5649 (-)
Gene ID: Rep_2300_c_50_6
Type: CAZyme
Location: 5671 - 6990 (-)
Gene ID: Rep_2300_c_50_7
Type: TC
Location: 7009 - 7827 (-)
Gene ID: Rep_2300_c_50_8
Type: TC
Location: 7841 - 8752 (-)
Gene ID: Rep_2300_c_50_9
Type: TC
Location: 8832 - 10175 (-)
Gene ID: Rep_2300_c_50_10
Type: STP
Location: 10370 - 11665 (-)
Gene ID: Rep_2300_c_50_11
Type: pfam
Location: 11719 - 12969 (-)
Gene ID: Rep_2300_c_50_12
Type: CAZyme
Location: 12991 - 19695 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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