Cluster: Rep_2300_CGC22
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_2300
- CGC Family ID: CGCFAM_02730
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2300_c_42 | Rep_2300_c_42_8 | 9716 | 10672 | + | 3.A.1.1.4 |
| TC | Rep_2300_c_42 | Rep_2300_c_42_9 | 10672 | 11520 | + | 3.A.1.1.13 |
| CAZyme | Rep_2300_c_42 | Rep_2300_c_42_10 | 11780 | 14221 | + | GH3 |
| CAZyme | Rep_2300_c_42 | Rep_2300_c_42_11 | 14545 | 19854 | + | CBM22 | CBM22 | CBM6 | CBM91 | GH43_10 | GH43_16 |
Gene ID: Rep_2300_c_42_8
Type: TC
Location: 9716 - 10672 (+)
Type: TC
Location: 9716 - 10672 (+)
Gene ID: Rep_2300_c_42_9
Type: TC
Location: 10672 - 11520 (+)
Type: TC
Location: 10672 - 11520 (+)
Gene ID: Rep_2300_c_42_10
Type: CAZyme
Location: 11780 - 14221 (+)
Type: CAZyme
Location: 11780 - 14221 (+)
Gene ID: Rep_2300_c_42_11
Type: CAZyme
Location: 14545 - 19854 (+)
Type: CAZyme
Location: 14545 - 19854 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Schaedlerella
Species
Schaedlerella sp905203555
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.