Cluster: Rep_2300_CGC20
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_2300
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2300_c_35 | Rep_2300_c_35_3 | 1393 | 3177 | + | 9.B.33.1.1 |
| TF | Rep_2300_c_35 | Rep_2300_c_35_4 | 3155 | 4609 | + | HTH_AraC |
| STP | Rep_2300_c_35 | Rep_2300_c_35_5 | 4703 | 5974 | + | SBP_bac_1 |
| TC | Rep_2300_c_35 | Rep_2300_c_35_6 | 6099 | 6950 | + | 3.A.1.1.7 |
| TC | Rep_2300_c_35 | Rep_2300_c_35_7 | 6947 | 7768 | + | 3.A.1.1.45 |
| NULL(UNKNOWN) | Rep_2300_c_35 | Rep_2300_c_35_8 | 7795 | 8346 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_2300_c_35 | Rep_2300_c_35_9 | 8352 | 9908 | + | GH36 |
| CAZyme | Rep_2300_c_35 | Rep_2300_c_35_10 | 9943 | 12105 | + | GH36 |
Gene ID: Rep_2300_c_35_3
Type: TC
Location: 1393 - 3177 (+)
Type: TC
Location: 1393 - 3177 (+)
Gene ID: Rep_2300_c_35_4
Type: TF
Location: 3155 - 4609 (+)
Type: TF
Location: 3155 - 4609 (+)
Gene ID: Rep_2300_c_35_5
Type: STP
Location: 4703 - 5974 (+)
Type: STP
Location: 4703 - 5974 (+)
Gene ID: Rep_2300_c_35_6
Type: TC
Location: 6099 - 6950 (+)
Type: TC
Location: 6099 - 6950 (+)
Gene ID: Rep_2300_c_35_7
Type: TC
Location: 6947 - 7768 (+)
Type: TC
Location: 6947 - 7768 (+)
Gene ID: Rep_2300_c_35_8
Type:
Location: 7795 - 8346 (+)
Type:
Location: 7795 - 8346 (+)
Gene ID: Rep_2300_c_35_9
Type: CAZyme
Location: 8352 - 9908 (+)
Type: CAZyme
Location: 8352 - 9908 (+)
Gene ID: Rep_2300_c_35_10
Type: CAZyme
Location: 9943 - 12105 (+)
Type: CAZyme
Location: 9943 - 12105 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Schaedlerella
Species
Schaedlerella sp905203555
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.