Cluster: Rep_2300_CGC19
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2300
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2300_c_30 | Rep_2300_c_30_5 | 5555 | 7186 | - | 2.A.35.2.1 |
| TC | Rep_2300_c_30 | Rep_2300_c_30_6 | 7720 | 8487 | + | 3.A.1.17.8 |
| pfam | Rep_2300_c_30 | Rep_2300_c_30_7 | 8480 | 9277 | + | BPD_transp_1 |
| TC | Rep_2300_c_30 | Rep_2300_c_30_8 | 9282 | 10196 | - | 2.A.19.5.2 |
| TC | Rep_2300_c_30 | Rep_2300_c_30_9 | 10645 | 12015 | - | 2.A.22.5.3 |
| CAZyme | Rep_2300_c_30 | Rep_2300_c_30_10 | 12237 | 17018 | - | CBM32 | CBM32 | CBM32 | GH20 |
Gene ID: Rep_2300_c_30_5
Type: TC
Location: 5555 - 7186 (-)
Type: TC
Location: 5555 - 7186 (-)
Gene ID: Rep_2300_c_30_6
Type: TC
Location: 7720 - 8487 (+)
Type: TC
Location: 7720 - 8487 (+)
Gene ID: Rep_2300_c_30_7
Type: pfam
Location: 8480 - 9277 (+)
Type: pfam
Location: 8480 - 9277 (+)
Gene ID: Rep_2300_c_30_8
Type: TC
Location: 9282 - 10196 (-)
Type: TC
Location: 9282 - 10196 (-)
Gene ID: Rep_2300_c_30_9
Type: TC
Location: 10645 - 12015 (-)
Type: TC
Location: 10645 - 12015 (-)
Gene ID: Rep_2300_c_30_10
Type: CAZyme
Location: 12237 - 17018 (-)
Type: CAZyme
Location: 12237 - 17018 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Schaedlerella
Species
Schaedlerella sp905203555
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.