Cluster: Rep_2300_CGC12
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_2300
- CGC Family ID: CGCFAM_10883
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_2300_c_19 | Rep_2300_c_19_19 | 17676 | 19916 | + | 3.A.1.135.6 |
| TC | Rep_2300_c_19 | Rep_2300_c_19_20 | 19909 | 21723 | + | 3.A.1.135.6 |
| TF | Rep_2300_c_19 | Rep_2300_c_19_21 | 22665 | 23453 | + | HTH_3 |
| pfam | Rep_2300_c_19 | Rep_2300_c_19_22 | 23583 | 24083 | + | MoaC |
| CAZyme | Rep_2300_c_19 | Rep_2300_c_19_23 | 24112 | 25029 | + | GH25 |
Gene ID: Rep_2300_c_19_19
Type: TC
Location: 17676 - 19916 (+)
Type: TC
Location: 17676 - 19916 (+)
Gene ID: Rep_2300_c_19_20
Type: TC
Location: 19909 - 21723 (+)
Type: TC
Location: 19909 - 21723 (+)
Gene ID: Rep_2300_c_19_21
Type: TF
Location: 22665 - 23453 (+)
Type: TF
Location: 22665 - 23453 (+)
Gene ID: Rep_2300_c_19_22
Type: pfam
Location: 23583 - 24083 (+)
Type: pfam
Location: 23583 - 24083 (+)
Gene ID: Rep_2300_c_19_23
Type: CAZyme
Location: 24112 - 25029 (+)
Type: CAZyme
Location: 24112 - 25029 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Schaedlerella
Species
Schaedlerella sp905203555
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.