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Cluster: Rep_2300_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2300_c_0 Rep_2300_c_0_51 54985 57252 + GH2
TC Rep_2300_c_0 Rep_2300_c_0_52 57294 58682 + 2.A.2.3.1
TC Rep_2300_c_0 Rep_2300_c_0_53 58897 60441 + 3.A.1.5.27
TC Rep_2300_c_0 Rep_2300_c_0_54 60498 61439 + 3.A.1.5.11
TC Rep_2300_c_0 Rep_2300_c_0_55 61468 62307 + 3.A.1.5.4
TC Rep_2300_c_0 Rep_2300_c_0_56 62304 63797 + 3.A.1.5.11
pfam Rep_2300_c_0 Rep_2300_c_0_57 63841 64599 + PseudoU_synth_1 | PseudoU_synth_1 | DUF2344
pfam Rep_2300_c_0 Rep_2300_c_0_58 64627 65379 + Exo_endo_phos
TC Rep_2300_c_0 Rep_2300_c_0_59 65411 66478 + 9.B.10.1.1
Gene ID: Rep_2300_c_0_51
Type: CAZyme
Location: 54985 - 57252 (+)
Gene ID: Rep_2300_c_0_52
Type: TC
Location: 57294 - 58682 (+)
Gene ID: Rep_2300_c_0_53
Type: TC
Location: 58897 - 60441 (+)
Gene ID: Rep_2300_c_0_54
Type: TC
Location: 60498 - 61439 (+)
Gene ID: Rep_2300_c_0_55
Type: TC
Location: 61468 - 62307 (+)
Gene ID: Rep_2300_c_0_56
Type: TC
Location: 62304 - 63797 (+)
Gene ID: Rep_2300_c_0_57
Type: pfam
Location: 63841 - 64599 (+)
Gene ID: Rep_2300_c_0_58
Type: pfam
Location: 64627 - 65379 (+)
Gene ID: Rep_2300_c_0_59
Type: TC
Location: 65411 - 66478 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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