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Cluster: Rep_2275_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2275_c_12 Rep_2275_c_12_19 17360 19192 + 8.A.59.2.1
TF Rep_2275_c_12 Rep_2275_c_12_20 19220 19963 + HTH_AraC
STP Rep_2275_c_12 Rep_2275_c_12_21 20180 21520 + SBP_bac_1
TC Rep_2275_c_12 Rep_2275_c_12_22 21638 22531 + 3.A.1.1.44
TC Rep_2275_c_12 Rep_2275_c_12_23 22533 23405 + 3.A.1.1.18
CAZyme Rep_2275_c_12 Rep_2275_c_12_24 23506 25572 + GH31_5
CAZyme Rep_2275_c_12 Rep_2275_c_12_25 25674 27674 + GH31_4
TC Rep_2275_c_12 Rep_2275_c_12_26 27695 28390 + 9.B.28.1.8
CAZyme Rep_2275_c_12 Rep_2275_c_12_27 28393 30642 + GH31_3
NULL(UNKNOWN) Rep_2275_c_12 Rep_2275_c_12_28 31172 32038 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_2275_c_12 Rep_2275_c_12_29 32032 32730 - 3.A.1.132.6
Gene ID: Rep_2275_c_12_19
Type: TC
Location: 17360 - 19192 (+)
Gene ID: Rep_2275_c_12_20
Type: TF
Location: 19220 - 19963 (+)
Gene ID: Rep_2275_c_12_21
Type: STP
Location: 20180 - 21520 (+)
Gene ID: Rep_2275_c_12_22
Type: TC
Location: 21638 - 22531 (+)
Gene ID: Rep_2275_c_12_23
Type: TC
Location: 22533 - 23405 (+)
Gene ID: Rep_2275_c_12_24
Type: CAZyme
Location: 23506 - 25572 (+)
Gene ID: Rep_2275_c_12_25
Type: CAZyme
Location: 25674 - 27674 (+)
Gene ID: Rep_2275_c_12_26
Type: TC
Location: 27695 - 28390 (+)
Gene ID: Rep_2275_c_12_27
Type: CAZyme
Location: 28393 - 30642 (+)
Gene ID: Rep_2275_c_12_28
Type:
Location: 31172 - 32038 (-)
Gene ID: Rep_2275_c_12_29
Type: TC
Location: 32032 - 32730 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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