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Cluster: Rep_2275_CGC39

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2275_c_141 Rep_2275_c_141_2 113 1183 - GT2
CAZyme Rep_2275_c_141 Rep_2275_c_141_3 1185 2402 - GT4
TC Rep_2275_c_141 Rep_2275_c_141_4 2416 3114 - 9.B.18.1.3
pfam Rep_2275_c_141 Rep_2275_c_141_5 3118 4320 - Aminotran_1_2 | DegT_DnrJ_EryC1
pfam Rep_2275_c_141 Rep_2275_c_141_6 4390 5718 - ALGX
TC Rep_2275_c_141 Rep_2275_c_141_7 5730 7139 - 2.A.50.2.1
pfam Rep_2275_c_141 Rep_2275_c_141_8 7305 8396 - DUF362
TC Rep_2275_c_141 Rep_2275_c_141_9 8573 9298 + 2.A.40.3.1
Gene ID: Rep_2275_c_141_2
Type: CAZyme
Location: 113 - 1183 (-)
Gene ID: Rep_2275_c_141_3
Type: CAZyme
Location: 1185 - 2402 (-)
Gene ID: Rep_2275_c_141_4
Type: TC
Location: 2416 - 3114 (-)
Gene ID: Rep_2275_c_141_5
Type: pfam
Location: 3118 - 4320 (-)
Gene ID: Rep_2275_c_141_6
Type: pfam
Location: 4390 - 5718 (-)
Gene ID: Rep_2275_c_141_7
Type: TC
Location: 5730 - 7139 (-)
Gene ID: Rep_2275_c_141_8
Type: pfam
Location: 7305 - 8396 (-)
Gene ID: Rep_2275_c_141_9
Type: TC
Location: 8573 - 9298 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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