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Cluster: Rep_2275_CGC33

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2275_c_78 Rep_2275_c_78_6 3044 4585 - CBM91 | GH43_10
CAZyme Rep_2275_c_78 Rep_2275_c_78_7 4610 6112 - GH51_1
CAZyme Rep_2275_c_78 Rep_2275_c_78_8 6185 7699 - GH51_1
TF Rep_2275_c_78 Rep_2275_c_78_9 7926 8846 + HTH_5
TC Rep_2275_c_78 Rep_2275_c_78_10 8959 9951 - 3.A.1.1.34
CAZyme Rep_2275_c_78 Rep_2275_c_78_11 10043 11503 + GH43_26
peptidase Rep_2275_c_78 Rep_2275_c_78_12 11580 12566 - S09.B04
TF Rep_2275_c_78 Rep_2275_c_78_13 12588 13955 - HTH_11
CAZyme Rep_2275_c_78 Rep_2275_c_78_14 14257 16521 - GT35
Gene ID: Rep_2275_c_78_6
Type: CAZyme
Location: 3044 - 4585 (-)
Gene ID: Rep_2275_c_78_7
Type: CAZyme
Location: 4610 - 6112 (-)
Gene ID: Rep_2275_c_78_8
Type: CAZyme
Location: 6185 - 7699 (-)
Gene ID: Rep_2275_c_78_9
Type: TF
Location: 7926 - 8846 (+)
Gene ID: Rep_2275_c_78_10
Type: TC
Location: 8959 - 9951 (-)
Gene ID: Rep_2275_c_78_11
Type: CAZyme
Location: 10043 - 11503 (+)
Gene ID: Rep_2275_c_78_12
Type: peptidase
Location: 11580 - 12566 (-)
Gene ID: Rep_2275_c_78_13
Type: TF
Location: 12588 - 13955 (-)
Gene ID: Rep_2275_c_78_14
Type: CAZyme
Location: 14257 - 16521 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_2275_c_78_8 vegan > omnivore 2.49192 0.03762
Rep_2275_c_78_8 vegetarian > omnivore 1.61799 0.04840

🧭 Explore Read Mapping of CGC

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