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Cluster: Rep_2275_CGC31

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2275_c_70 Rep_2275_c_70_4 2835 4901 - GH31_1
TF Rep_2275_c_70 Rep_2275_c_70_5 5031 5909 + HTH_AraC | HTH_AraC
TF Rep_2275_c_70 Rep_2275_c_70_6 6191 6961 + HTH_AraC | HTH_AraC
CAZyme Rep_2275_c_70 Rep_2275_c_70_7 7019 9430 - GH94
CAZyme Rep_2275_c_70 Rep_2275_c_70_8 9458 12157 - GH94
NULL(UNKNOWN) Rep_2275_c_70 Rep_2275_c_70_9 12408 13793 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_2275_c_70 Rep_2275_c_70_10 13855 14811 + 3.A.1.1.4
TC Rep_2275_c_70 Rep_2275_c_70_11 14815 15660 + 3.A.1.1.20
CAZyme Rep_2275_c_70 Rep_2275_c_70_12 15675 18089 + GH3
Gene ID: Rep_2275_c_70_4
Type: CAZyme
Location: 2835 - 4901 (-)
Gene ID: Rep_2275_c_70_5
Type: TF
Location: 5031 - 5909 (+)
Gene ID: Rep_2275_c_70_6
Type: TF
Location: 6191 - 6961 (+)
Gene ID: Rep_2275_c_70_7
Type: CAZyme
Location: 7019 - 9430 (-)
Gene ID: Rep_2275_c_70_8
Type: CAZyme
Location: 9458 - 12157 (-)
Gene ID: Rep_2275_c_70_9
Type:
Location: 12408 - 13793 (+)
Gene ID: Rep_2275_c_70_10
Type: TC
Location: 13855 - 14811 (+)
Gene ID: Rep_2275_c_70_11
Type: TC
Location: 14815 - 15660 (+)
Gene ID: Rep_2275_c_70_12
Type: CAZyme
Location: 15675 - 18089 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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