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Cluster: Rep_2275_CGC22

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_2275_c_40 Rep_2275_c_40_4 2463 3527 + GT28
STP Rep_2275_c_40 Rep_2275_c_40_5 3528 4085 - Sigma70_r2
pfam Rep_2275_c_40 Rep_2275_c_40_6 4104 4511 - HIT | DcpS_C
TC Rep_2275_c_40 Rep_2275_c_40_7 4666 5394 + 2.A.21.9.1
TC Rep_2275_c_40 Rep_2275_c_40_8 5387 6010 - 9.B.104.1.3
peptidase Rep_2275_c_40 Rep_2275_c_40_9 6294 6803 + A24.UNA
NULL(UNKNOWN) Rep_2275_c_40 Rep_2275_c_40_10 6800 7801 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_2275_c_40 Rep_2275_c_40_11 7794 8993 + 3.A.7.15.1
pfam Rep_2275_c_40 Rep_2275_c_40_12 8980 9720 + T2SSF
NULL(UNKNOWN) Rep_2275_c_40 Rep_2275_c_40_13 9710 10933 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_2275_c_40 Rep_2275_c_40_14 10962 11129 + 1.E.52.1.1
Gene ID: Rep_2275_c_40_4
Type: CAZyme
Location: 2463 - 3527 (+)
Gene ID: Rep_2275_c_40_5
Type: STP
Location: 3528 - 4085 (-)
Gene ID: Rep_2275_c_40_6
Type: pfam
Location: 4104 - 4511 (-)
Gene ID: Rep_2275_c_40_7
Type: TC
Location: 4666 - 5394 (+)
Gene ID: Rep_2275_c_40_8
Type: TC
Location: 5387 - 6010 (-)
Gene ID: Rep_2275_c_40_9
Type: peptidase
Location: 6294 - 6803 (+)
Gene ID: Rep_2275_c_40_10
Type:
Location: 6800 - 7801 (+)
Gene ID: Rep_2275_c_40_11
Type: TC
Location: 7794 - 8993 (+)
Gene ID: Rep_2275_c_40_12
Type: pfam
Location: 8980 - 9720 (+)
Gene ID: Rep_2275_c_40_13
Type:
Location: 9710 - 10933 (+)
Gene ID: Rep_2275_c_40_14
Type: TC
Location: 10962 - 11129 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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