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Cluster: Rep_2275_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_2275_c_29 Rep_2275_c_29_6 4585 5202 + 9.B.156.3.1
pfam Rep_2275_c_29 Rep_2275_c_29_7 5475 6149 + YhcG_C
CAZyme Rep_2275_c_29 Rep_2275_c_29_8 6470 8377 - GH20
TC Rep_2275_c_29 Rep_2275_c_29_9 8392 9750 - 2.A.66.1.33
NULL(UNKNOWN) Rep_2275_c_29 Rep_2275_c_29_10 9929 10732 + NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) Rep_2275_c_29 Rep_2275_c_29_11 10729 11412 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_2275_c_29 Rep_2275_c_29_12 11878 13233 + 2.A.25.1.3
NULL(UNKNOWN) Rep_2275_c_29 Rep_2275_c_29_13 13361 13588 + NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_2275_c_29 Rep_2275_c_29_14 14307 16268 + tRNA-synt_1 | tRNA-synt_1 | tRNA_bind | Anticodon_1 | tRNA-synt_1g | tRNA-synt_1g | Anticodon_3
TC Rep_2275_c_29 Rep_2275_c_29_15 16526 19132 + 3.A.3.2.21
TC Rep_2275_c_29 Rep_2275_c_29_16 19228 20385 + 2.A.86.1.8
pfam Rep_2275_c_29 Rep_2275_c_29_17 20375 21139 + TatD_DNase
CAZyme Rep_2275_c_29 Rep_2275_c_29_18 21252 22808 + GH13_44
STP Rep_2275_c_29 Rep_2275_c_29_19 22912 23562 + TetR_N
CAZyme Rep_2275_c_29 Rep_2275_c_29_20 23578 24936 + GH13_20
CAZyme Rep_2275_c_29 Rep_2275_c_29_21 24996 26900 + CBM48 | GH13_9
Gene ID: Rep_2275_c_29_6
Type: TC
Location: 4585 - 5202 (+)
Gene ID: Rep_2275_c_29_7
Type: pfam
Location: 5475 - 6149 (+)
Gene ID: Rep_2275_c_29_8
Type: CAZyme
Location: 6470 - 8377 (-)
Gene ID: Rep_2275_c_29_9
Type: TC
Location: 8392 - 9750 (-)
Gene ID: Rep_2275_c_29_10
Type:
Location: 9929 - 10732 (+)
Gene ID: Rep_2275_c_29_11
Type:
Location: 10729 - 11412 (+)
Gene ID: Rep_2275_c_29_12
Type: TC
Location: 11878 - 13233 (+)
Gene ID: Rep_2275_c_29_13
Type:
Location: 13361 - 13588 (+)
Gene ID: Rep_2275_c_29_14
Type: pfam
Location: 14307 - 16268 (+)
Gene ID: Rep_2275_c_29_15
Type: TC
Location: 16526 - 19132 (+)
Gene ID: Rep_2275_c_29_16
Type: TC
Location: 19228 - 20385 (+)
Gene ID: Rep_2275_c_29_17
Type: pfam
Location: 20375 - 21139 (+)
Gene ID: Rep_2275_c_29_18
Type: CAZyme
Location: 21252 - 22808 (+)
Gene ID: Rep_2275_c_29_19
Type: STP
Location: 22912 - 23562 (+)
Gene ID: Rep_2275_c_29_20
Type: CAZyme
Location: 23578 - 24936 (+)
Gene ID: Rep_2275_c_29_21
Type: CAZyme
Location: 24996 - 26900 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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