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Cluster: Rep_223_CGC57

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_223_c_274 Rep_223_c_274_2 929 2095 - 2.A.1.7.17
CAZyme Rep_223_c_274 Rep_223_c_274_3 2117 3835 - GH32
CAZyme Rep_223_c_274 Rep_223_c_274_4 4036 5565 - GH32
pfam Rep_223_c_274 Rep_223_c_274_5 5577 7079 - DUF4960
pfam Rep_223_c_274 Rep_223_c_274_6 7116 8849 - SusD_RagB | SusD-like_3
TC Rep_223_c_274 Rep_223_c_274_7 8882 11977 - 1.B.14.6.1
NULL(UNKNOWN) Rep_223_c_274 Rep_223_c_274_8 12593 12850 + NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_223_c_274 Rep_223_c_274_9 12948 14228 + AAA_14 | DUF4143
CAZyme Rep_223_c_274 Rep_223_c_274_10 14293 16656 - GH2
Gene ID: Rep_223_c_274_2
Type: TC
Location: 929 - 2095 (-)
Gene ID: Rep_223_c_274_3
Type: CAZyme
Location: 2117 - 3835 (-)
Gene ID: Rep_223_c_274_4
Type: CAZyme
Location: 4036 - 5565 (-)
Gene ID: Rep_223_c_274_5
Type: pfam
Location: 5577 - 7079 (-)
Gene ID: Rep_223_c_274_6
Type: pfam
Location: 7116 - 8849 (-)
Gene ID: Rep_223_c_274_7
Type: TC
Location: 8882 - 11977 (-)
Gene ID: Rep_223_c_274_8
Type:
Location: 12593 - 12850 (+)
Gene ID: Rep_223_c_274_9
Type: pfam
Location: 12948 - 14228 (+)
Gene ID: Rep_223_c_274_10
Type: CAZyme
Location: 14293 - 16656 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Prevotella
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_223_c_274_3 vegetarian > omnivore 1.44493 0.02426

🧭 Explore Read Mapping of CGC

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